[adegenet-forum] SNP alleles

[Jombart, Thibaut]

Yup.
________________________________________
From: Caitlin Collins [caitiecollins at gmail.com]
Sent: 17 June 2014 15:28
To: Jombart, Thibaut
Cc: Miguel Navascués; adegenet-forum at lists.r-forge.r-project.org
Subject: Re: [adegenet-forum] SNP alleles

For this purpose, it would also be adequate to just change sep from "/" to " / ", but I suppose there may be other reasons to want to remove the white spaces.

Cheers,
Caitlin.


On Tue, Jun 17, 2014 at 3:08 PM, Jombart, Thibaut <t.jombart at imperial.ac.uk<mailto:t.jombart at imperial.ac.uk>> wrote:

Ahah, well spotted! I totally missed it.

Yep, open your file, remove all white spaces, and it should fly.

Cheers
Thibaut
________________________________________
From: adegenet-forum-bounces at lists.r-forge.r-project.org<mailto:adegenet-forum-bounces at lists.r-forge.r-project.org> [adegenet-forum-bounces at lists.r-forge.r-project.org<mailto:adegenet-forum-bounces at lists.r-forge.r-project.org>] on behalf of Miguel Navascués [m.navascues at gmail.com<mailto:m.navascues at gmail.com>]
Sent: 17 June 2014 15:01
To: adegenet-forum at lists.r-forge.r-project.org<mailto:adegenet-forum at lists.r-forge.r-project.org>
Subject: Re: [adegenet-forum] SNP alleles

In one of your messages (below) there seem to be spaces in addition to
"/" separating the alleles. May be worth to check if that can cause the
problem.

Best

Miguel

On 17/06/14 14:47, Andrea Garavito wrote:
>  >test<-myData[1:10,1:10]
>  >test
>      loc_29      loc_7       loc_43  etc...
> 1  "G / A"      "C / T"     "T / T"
> 2  "G / G"      "C / T"     "T/ T"
> etc...


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Miguel NAVASCUÉS, PhD

Chargé de Recherche (CR2) INRA

UMR CBGP Centre de Biologie pour la Gestion des Populations
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