[adegenet-forum] find.cluster Warning messages

[Jombart, Thibaut]

Hello,
this seems to be an error in the kmeans implementation itself, over which I have no control. 
Does the error not occur in a smaller subset of the data?

Cheers
Thibaut

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Dr Thibaut JOMBART
MRC Centre for Outbreak Analysis and Modelling
Department of Infectious Disease Epidemiology
Imperial College - School of Public Health
St Mary’s Campus
Norfolk Place
London W2 1PG
United Kingdom
Tel. : 0044 (0)20 7594 3658
t.jombart at imperial.ac.uk
http://sites.google.com/site/thibautjombart/
http://adegenet.r-forge.r-project.org/
________________________________________
From: adegenet-forum-bounces at lists.r-forge.r-project.org [adegenet-forum-bounces at lists.r-forge.r-project.org] on behalf of Mark Coulson [Mark.Coulson at glasgow.ac.uk]
Sent: 27 January 2014 13:19
To: adegenet-forum at lists.r-forge.r-project.org
Subject: [adegenet-forum] find.cluster Warning messages

Hello,

I am trying to run adegenet on a large dataset (17 loci, but for ~12,000 individuals).

When I run the find.clusters argument it allows me to pick the number of pc but then gives the following message:


Warning messages:

1: Quick-TRANSfer stage steps exceeded maximum (= 616850)

2: Quick-TRANSfer stage steps exceeded maximum (= 616850)

3: Quick-TRANSfer stage steps exceeded maximum (= 616850)


Are there limits to the dataset size?


Mark