[adegenet-forum] R commanding for Cluster finding and DAPC from FASTA mtDNA data file

Jombart, Thibaut t.jombart at imperial.ac.uk
Thu Jan 16 12:46:00 CET 2014

Dear Lyimo, 

please have a look at the documentation on the adegenet website:

Especially the vignettes on 'basics' and on 'DAPC'. If you still have questions after reading these, feel free to post them on this forum. You probably also want to check the manpages of fasta2DNAbin, DNAbin2genind, and dapc. 


From: adegenet-forum-bounces at lists.r-forge.r-project.org [adegenet-forum-bounces at lists.r-forge.r-project.org] on behalf of Charles Lyimo [lyimo.charles at googlemail.com]
Sent: 15 January 2014 14:55
To: adegenet-forum at lists.r-forge.r-project.org
Subject: [adegenet-forum] R commanding for Cluster finding and DAPC from        FASTA mtDNA data file

Hi members,
I have FASTA file of mtDNA sequence data for 60 chicken populations
from different continents. I want to find the cluster and plot the
Discriminant Analysis of principal Components of these chicken
populations using R. I am requesting the assistance of comand lines
that I should use for these kind of analyses.

Thank you in advance.


Sokoine University of Agriculture (SUA),
Faculty of Sciences, Dept. of Biological Sciences,
P.O. Box 3038, Morogoro, Tanzania
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