[adegenet-forum] importing data frame as a genind file

Vojtěch Zeisek vojta at trapa.cz
Mon Dec 1 12:50:45 CET 2014

I think we would need some reproducible example - piece of Your original data, 
commands You did and errors and other output produced by those commands...

Dne Po 1. prosince 2014 11:48:26, Mark Coulson napsal(a):
> Dear all,
> I have had some success getting data files into adegenet but only with the
> import2genind command using a genpop file and never from the
> importstructure, genepop, etc. My preference would be to import a dataframe
> with column 1 as the population name, column 2 as the individual identifier
> and the remaining columns as the individual loci. I did get this to work
> with some previous suggestions on the forum, however, the summary(x)
> command tells me I have precisely 10 alleles at each locus (actually there
> are between 9 and 63) and massive differences in Hexp vs. Hobs (which there
> aren't). So clearly something isn't being interpreted correctly despite the
> fact that I can create both the genind and genpop files.
> Any ideas why my loci are being mis-read?
> Thanks,
> Mark
Vojtěch Zeisek

Department of Botany, Faculty of Science
Charles University in Prague
Benátská 2, Prague, 12801, CZ

Institute of Botany, Academy of Science
Zámek 1, Průhonice, 25243, CZ

Czech Republic
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