[adegenet-forum] Missing values in genlight object

[Thiho Jules]

Hello,

I have a question regarding genlight objects.

How can I perform a between group PCA analysis with genlight object?

I wanted to use dudi.pca and bca functions but they give me errors about
the missing values. I tried to replace the missing values with 0 but this
is not correct. Moreover, I receive an error regarding repeated row.names.

Thank you very much in advance for your help,
Regards,
Sara


On Thu, Jan 10, 2013 at 3:05 PM, Thiho Jules <thjnant at gmail.com> wrote:

> Hello,
>
> I have created a genlight object within the package "adegenet". I wanted
> to do between-group PCA which requires that I first use the funtion,
> dudi.pca.
>
> But my genlight object involves "NA" or missing values, therefore, the
> dudi.pca function gives an error. I would like to know how I can remove the
> NA in a genlight object?
>
> I tried na.replace and na.omit but none works, and NA.posi only gives me
> the position of the missing values.
>
> Thank you in advance for your help,
> Best,
> Sara
>
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