[adegenet-forum] detecting outliers - loci under selection

[Jombart, Thibaut]

Hi there, 

adegenet can be used to do a few things, R can do pretty much everything, but first we need to know what you mean by outlying loci. Do you have any trait information to relate alleles to? In any case, there will be multiple testing issue as this is possibly the worst setting for GWAS-type of analysis.

Cheers

Thibaut

________________________________________
From: adegenet-forum-bounces at lists.r-forge.r-project.org [adegenet-forum-bounces at lists.r-forge.r-project.org] on behalf of Mayte Ruiz [mayaruizz at gmail.com]
Sent: 27 November 2012 13:58
To: adegenet-forum at lists.r-forge.r-project.org
Subject: [adegenet-forum] detecting outliers - loci under selection

Dear Thibaut Jombart and adegenet users,

I am working with RAD sequenced data of 2 populations with only 10 individuals each but with many many loci.  I have been searching for a program which detects outliers (loci under selection) from my data.  A colleague has suggested adegenet as a possibility.  Can adegenet be used for this?  I have searched the manual but do not yet find anything explicitly on detecting outlier loci.

Many thanks,
Mayte

--
Mayte Ruiz, Ph.D
Post-doctoral Fellow
University of Puerto Rico Rio Piedras
mayaruizz at gmail.com<mailto:mayaruizz at gmail.com>