[adegenet-forum] help re adegenet error message

Jombart, Thibaut t.jombart at imperial.ac.uk
Tue Feb 8 11:36:33 CET 2011


from the FAQ available on adegenet website (http://adegenet.r-forge.r-project.org/):

# 4: Loading adegenet fails with this error:
Error in as.environment(pos) : no item called "newtable" on the search list
Same problem as #2; you need to install adegenet with dependencies:
install.packages("adegenet", dep=TRUE)

Best regards


From: adegenet-forum-bounces at r-forge.wu-wien.ac.at [adegenet-forum-bounces at r-forge.wu-wien.ac.at] On Behalf Of Sarah Pearson [sarah.pearson at flinders.edu.au]
Sent: 08 February 2011 00:49
To: adegenet-forum at lists.r-forge.r-project.org
Subject: [adegenet-forum] help re adegenet error message

Hello, I would like to run the DAPC procedure to identify genetic clusters within my sample set. The first function I am trying is df2genind; I am getting an error message saying that function cannot be found. When loading adegenet, I am getting the message that I have copied below. I am seeking advice re how to manage/fix this error so that I can undertake my analysis.
Sarah Pearson

> require(ade4);require(adegenet)
Loading required package: ade4
Attaching package: 'ade4'
The following object(s) are masked from 'package:base':
Loading required package: adegenet
    adegenet 1.2-8 is loaded
 - to start, type '?adegenet'
 - to browse adegenet website, type 'adegenetWeb()'
 - to post questions/comments: adegenet-forum at lists.r-forge.r-project.org<mailto:adegenet-forum at lists.r-forge.r-project.org>

Failed with error:  ‘no item called "newtable" on the search list’
In addition: Warning messages:
1: In objects(newtable, all.names = TRUE) :
  ‘newtable’ converted to character string
2: In objects(newtable, all.names = TRUE) :
  ‘newtable’ converted to character string

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