[adegenet-forum] Missing values

[Jombart, Thibaut]

Dear Yang, 

this means that there are 4340 missing values in the table of relative allele frequencies. Note that this will be higher than in your original dataset, since a missing at a locus results in the various allele frequencies going missing.

To ascertain the typing success in your data, you can use summary (overal % of NA) or -better, more detailed- the function propTyped.

Best regards

Thibaut

________________________________________
From: Liu Yang [yangliubnu at gmail.com]
Sent: 22 November 2010 11:05
To: Jombart, Thibaut
Subject: Re: [adegenet-forum] Missing values

Dear Thibaut,

Thanks for your quick reply. Here are things R gave.

> any(is.na<http://is.na>(odec1$tab))
[1] TRUE
> sum(is.na<http://is.na>(odec1$tab))
[1] 4340

Sorry it was not 4370 but 4340:-)

I'm just wondering what does this value mean?

Thanks in advance!

Yang