[adegenet-forum] Exporting to Structure

Jombart, Thibaut t.jombart at imperial.ac.uk
Wed Apr 21 11:42:12 CEST 2010

Dear Andrew, 

I haven't heard of a similar problem before. I know some people have been generating files for STRUCTURE using hybridize, so it should work.

However, I would need to see the data the figure out what's wrong. May you send me your R objects IGH and TRHF (off-list if these are non-public data)?



From: adegenet-forum-bounces at lists.r-forge.r-project.org [adegenet-forum-bounces at lists.r-forge.r-project.org] On Behalf Of Andrew Kinziger [Andrew.Kinziger at humboldt.edu]
Sent: 16 April 2010 17:47
To: adegenet-forum at lists.r-forge.r-project.org
Subject: [adegenet-forum] Exporting to Structure

I am trying to run the HYBRIDIZE function and export my data to
STRUCTURE format but I keep getting the result below.  Do you know what
is going on here?  Do you have any code available for coverting a genind
to STRUCTURE format?


 > hybrid <- hybridize (IGH, TRHF, n=40, pop = "hybrid", res.type =
"STRUCTURE", file = "hybrid")
Error in names(x) <- value :
  'names' attribute [54] must be the same length as the vector [53]
In addition: Warning message:
In matrix(res, nrow = nrow(temp), byrow = TRUE) :
  data length [14132] is not a sub-multiple or multiple of the number of
rows [268]

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