[adegenet-forum] chooseCN

[Penner, Johannes]

Dear adegenet users,

I am trying to apply the Monmonier algorithm. Using

network <- chooseCN(mycoordinates, edit.nb=T)

I am able to edit depict and edit a network. However, when I later try
to apply the algorithm:

mon1 <- monmonier(mycoordinates, mydistancamatrix, network$cn, ...)

I consistently get the error: "cn ist not a nb object". It seems the
problem is that no nb object is created:
- The command "class(cn)" returns an error that "object 'cn" was not
found. 
- The command "network$cn" returns the answer "NULL".

Despite trying all day, including reinstalling R and the packages, I was
not able to find a solution. I also tried all variations suggested in
the tutorial, manual and help files. Any help and suggestions are highly
appreciated!

Thank you very much in advance!

Best wishes
Johannes