[adegenet-forum] Can AFLP data be applied to adegenet?

[Thibaut Jombart]

Yu-Huang Wang wrote:
> Yu-Huang Wang wrote:
> > Dear Dr. Jombart,
> > 
> > I used AFLP to study the landscape genetics of spiny rat.  I tried to
> > identify the position of  its genetic boundaries and overlay the
> > boundaries with potential dispersal barriers (highway, river, etc.).
> > I have tried 'wombsoft' but there is still some subjectivity of
> > defining genetic bandwidth.  I read through the manual of adegenet.
> > It seems that AFLP data can not be used for the sPCA in adegenet. 
> > Will you include the function of using AFLP data for adegenet in the
> > near future?
> > 
> > Best regards,
> > 
> > Yu-Huang Wang
> > PhD. Candidate
> > Dep. Life Science
> > Tung-Hai University
> > Taichung City
> > Taiwan
> > 
> > 
>
> As soon as I have time, I will add a section in the tutorial about 
> reading AFLP in adegenet.
Done now, the updated tutorial is online (section 'Documents' on the 
adegenet website).

Best regards,

Thibaut.

-- 
######################################
Thibaut JOMBART
CNRS UMR 5558 - Laboratoire de Biométrie et Biologie Evolutive
Universite Lyon 1
43 bd du 11 novembre 1918
69622 Villeurbanne Cedex
Tél. : 04.72.43.29.35
Fax : 04.72.43.13.88
jombart at biomserv.univ-lyon1.fr
http://biomserv.univ-lyon1.fr/%7Ejombart/
http://adegenet.r-forge.r-project.org/