[adegenet-commits] r1165 - www

noreply at r-forge.r-project.org noreply at r-forge.r-project.org
Wed Mar 19 18:08:56 CET 2014 

Author: jombart
Date: 2014-03-19 18:08:55 +0100 (Wed, 19 Mar 2014)
New Revision: 1165

Modified:
   www/download.html
   www/news.html
Log:
updating website

Modified: www/download.html
===================================================================
--- www/download.html	2014-03-19 16:46:17 UTC (rev 1164)
+++ www/download.html	2014-03-19 17:08:55 UTC (rev 1165)
@@ -30,20 +30,18 @@
       <br>
       <img alt="" src="images/bullet.png" style="width: 10px; height:
         10px;"> The <span style="font-weight: bold;">current stable
-        version</span> (adegenet_1.3-9) is available as:<br>
+        version</span> (adegenet_1.4-1) is available as:<br>
       - <a
-        href="http://cran.at.r-project.org/src/contrib/adegenet_1.3-9.tar.gz">linux
+        href="http://cran.r-project.org/src/contrib/adegenet_1.4-1.tar.gz">linux
+
         sources</a><br>
-      - MacOS X binary<br>
-      - Windows binary<br>
-      <br>
-      <img alt="" src="images/bullet.png" style="width: 10px; height:
-        10px;"> The <span style="font-weight: bold;">devel version</span>
-      (adegenet_1.4-0) is also available from <a
-        href="https://r-forge.r-project.org/scm/?group_id=120"
-        target="_top">R-Forge's daily snapshots</a>.<br>
-      It can be installed directly from R console using: <br>
-      <span style="font-family: monospace;">install.packages("adegenet",repos="http://r-forge.r-project.org")<br>
+      - <a
+href="http://cran.r-project.org/bin/macosx/contrib/r-release/adegenet_1.4-0.tgz">MacOS
+        X binary</a><br>
+      - <a
+href="http://cran.r-project.org/bin/windows/contrib/r-release/adegenet_1.4-1.zip">Windows
+        binary</a><br>
+      <span style="font-family: monospace;"><br>
         <br>
       </span><img alt="" src="images/bullet.png" style="width: 10px;
         height: 10px;"> <span style="font-weight: bold;">Patches</span> 
@@ -53,6 +51,7 @@
 
 
 
+
       <br>
       Patches correct minor bugs or implement new functionnalities, and
       will be included into the next CRAN release. It is recommended to
@@ -68,6 +67,7 @@
 
 
 
+
       a patch.<br>
       <a href="files/patches/addedFeatures.R"><span style="font-family:
           monospace;">addedFeatures.R</span></a>: (for adegenet
@@ -81,15 +81,26 @@
           monospace;"></span></a><br>
       <img alt="" src="images/bullet.png" style="width: 10px; height:
         10px;"> <span style="font-weight: bold;">Older versions</span>:<br>
+      adegenet_1.3-9<br>
+      - <a
+        href="http://cran.at.r-project.org/src/contrib/adegenet_1.3-9.tar.gz">linux
+
+        sources</a><br>
+      - MacOS X binary<br>
+      - Windows binary<br>
+      <br>
       adegenet _1.3-8<br>
       - <a
         href="file:///home/thibaut/dev/adegenet/www/files/adegenet_1.3-8.tar.gz">linux
+
         sources</a><br>
       - <a
         href="file:///home/thibaut/dev/adegenet/www/files/adegenet_1.3-8.tgz">MacOS
+
         X binary</a><br>
       - <a
         href="file:///home/thibaut/dev/adegenet/www/files/adegenet_1.3-8.zip">Windows
+
         binary</a><br>
       <br>
       adegenet _1.3-7<br>

Modified: www/news.html
===================================================================
--- www/news.html	2014-03-19 16:46:17 UTC (rev 1164)
+++ www/news.html	2014-03-19 17:08:55 UTC (rev 1165)
@@ -28,20 +28,38 @@
         0, 0);"></span><br>
       <br>
       <span style="font-weight: bold;">What's next<big></big></span>?<br>
-      Next release (1.4-1) is under development.<br>
+      Next release (1.4-2) is under development.<br>
       <br>
       <br>
       <span style="font-weight: bold;"><big>Today</big> </span><span
         style="font-weight: bold;"></span><span style="font-weight:
         bold;"></span><br>
       <span style="font-weight: bold;"></span>Current stable version of
-      <span style="color: rgb(255, 0, 0);">adegenet is 1.4-0 </span>for
+      <span style="color: rgb(255, 0, 0);">adegenet is 1.4-1 </span>for
       R.3.0.3.<br>
       See the current <a
         href="http://cran.r-project.org/web/packages/adegenet/ChangeLog">ChangeLog</a>
       for a list of all modifications.<br>
       <br>
       <br>
+      18/03/2014 <img style=" width: 80px; height: 37px;" alt=""
+        src="images/new.png" height="37" width="80"><br>
+      <big>New adegenet version (<span style="color: rgb(255, 0, 0);">1.4-1</span>)
+        has been released for R-3.0.3!</big> <span style="color:
+        rgb(255, 0, 0);"><span style="color: rgb(0, 0, 0);">Releasing a
+          package with a new function to open tutorials that does not
+          actually work is arguably bad form</span></span><span
+        style="color: rgb(255, 0, 0);"><span style="color: rgb(0, 0,
+          0);">. This version fixes release 1.4-0. </span><span
+          style="color: rgb(0, 0, 0);">See the </span></span><span
+        style="color: rgb(255, 0, 0);"><span style="color: rgb(0, 0,
+          0);"></span></span><a
+        href="http://cran.r-project.org/web/packages/adegenet/ChangeLog">ChangeLog</a><span
+        style="color: rgb(255, 0, 0);"><span style="color: rgb(0, 0,
+          0);"></span></span><span style="color: rgb(255, 0, 0);"><span
+          style="color: rgb(0, 0, 0);"> file for more details.</span></span><br>
+      <br>
+      <br>
       14/03/2014 <img style=" width: 80px; height: 37px;" alt=""
         src="images/new.png" height="37" width="80"><br>
       <big>New adegenet version (<span style="color: rgb(255, 0, 0);">1.4-0</span>)
@@ -65,6 +83,7 @@
                 style="font-family: monospace; color: rgb(255, 0, 0);">snpposi.plot,snpposi.test</span></span></span>),
 
 
+
           and DAPC-based feature selection (</span></span><span
         style="color: rgb(255, 0, 0);"><span style="color: rgb(0, 0,
           0);"><span style="color: rgb(255, 0, 0);"><span style="color:
@@ -73,6 +92,7 @@
                     monospace; color: rgb(255, 0, 0);">snpzip</span></span></span></span></span>).
 
 
+
         </span><span style="color: rgb(0, 0, 0);">See the </span></span><span
         style="color: rgb(255, 0, 0);"><span style="color: rgb(0, 0,
           0);"></span></span><a
@@ -164,6 +184,7 @@
 
 
 
+
           with a possibility of visualization using graphs (</span></span><span
         style="color: rgb(255, 0, 0);"><span style="color: rgb(0, 0,
           0);"><span style="color: rgb(255, 0, 0); font-family:
@@ -258,6 +279,7 @@
 
 
 
+
       </span>package seems to be gone for good from CRAN, but the
       documentation shows how to use <span style="color: rgb(255, 0,
         0); font-family: monospace;">Fst</span> from the <span
@@ -500,6 +522,7 @@
 
 
 
+
           time, the tutorial has been updated at the same time as the
           package release!<br>
           <br>
@@ -644,6 +667,7 @@
 
 
 
+
       The function <span style="font-family: monospace; color: rgb(255,
         0, 0);">chooseCN</span> has a new option to return a list of
       spatial weights defined as the inverse of spatial distances, at a
@@ -688,6 +712,7 @@
 
 
 
+
       Principal Component Analysis (Jombart et al, submitted to
       Heredity), two multivariate spatial tests, and new functionalities
       for Monmonier's algorithm.<br>
@@ -710,6 +735,7 @@
 
 
 
+
         manipulation:</span> new function to separate data by
       population. Accessors to genind and genpop object like with
       matrices using 'foo[ chosenGenotypes, chosenAlleles]'.<br>
@@ -762,6 +788,7 @@
 
 
 
+
       using <span style="font-family: monospace; color: rgb(255, 0,
         0);">sim2pop</span><span style="color: rgb(255, 0, 0);"> </span>data.<br>
       <span style="font-weight: bold;"><br>

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