[adegenet-commits] r1164 - in www: . files

noreply at r-forge.r-project.org noreply at r-forge.r-project.org
Wed Mar 19 17:46:18 CET 2014 

Author: jombart
Date: 2014-03-19 17:46:17 +0100 (Wed, 19 Mar 2014)
New Revision: 1164

Modified:
   www/documentation.html
   www/files/tutorial-basics.pdf
Log:
recompiled the vignette with version 1.4-1

Modified: www/documentation.html
===================================================================
--- www/documentation.html	2014-03-19 16:36:10 UTC (rev 1163)
+++ www/documentation.html	2014-03-19 16:46:17 UTC (rev 1164)
@@ -52,6 +52,7 @@
 
 
 
+
         engine</a>. <br>
       <br>
       <br>
@@ -66,44 +67,43 @@
 
 
 
+
       which compiles all the manpages of the package.<br>
       <br>
       <br>
-      <span style="color: rgb(0, 102, 0); font-weight: bold;">Tutorials*</span><br>
+      <span style="color: rgb(0, 102, 0); font-weight: bold;">Tutorials*</span><img
+        style=" width: 80px; height: 37px;" alt="" src="images/new.png">
       <ul>
         <li><a href="files/tutorial-basics.pdf"><span style="font-style:
               italic;">tutorial-basics</span></a>: introduction to the
           package: data classes, inputs/outputs, basic population
           genetics, and exploratory analyses; accessible from R by
           typing <span style="font-family: monospace; color: rgb(255,
-            0, 0);">adegenetTutorial("basics")</span>.<img alt=""
-            src="images/new.png" height="37" width="80"></li>
+            0, 0);">adegenetTutorial("basics")</span>.</li>
         <li><a href="files/tutorial-dapc.pdf"><span style="font-style:
               italic;">tutorial-dapc</span></a>: a tutorial for the
           analysis of population diversity using Discriminant Analysis
           of Principal Components (DAPC); accessible from R by
           typing <span style="font-family: monospace; color:
             rgb(255, 0, 0);"><span style="font-family: monospace; color:
-              rgb(255, 0, 0);">adegenetTutorial</span>("dapc")</span>.<img
-            alt="" src="images/new.png" height="37" width="80"></li>
+              rgb(255, 0, 0);">adegenetTutorial</span>("dapc")</span>.</li>
         <li><a href="files/tutorial-genomics.pdf"><span
               style="font-style: italic;">tutorial-genomics</span></a>:
           introduction to the genlight class for storing and handling
           large genome-wide SNP data; accessible from R by typing <span
             style="font-family: monospace;"></span><span
-            style="font-family: monospace; color: rgb(255, 0, 0);">adegenetTutorial("genomics")</span>.<img
-            style=" width: 80px; height: 37px;" alt=""
-            src="images/new.png"></li>
+            style="font-family: monospace; color: rgb(255, 0, 0);">adegenetTutorial("genomics")</span>.</li>
         <li><a href="files/tutorial-spca.pdf"><span style="font-style:
-              italic;">adegenet-spca</span></a>: spatial multivariate
-          analysis using adegenet; includes an introduction to spatial
-          PCA (sPCA); accessible from R by typing <span
-            style="font-family: monospace; color: rgb(255, 0, 0);">vignette("adegenet-spca")</span>.</li>
+              italic;">tutorial-spca</span></a>: introduction to spatial
+          multivariate analysis using the spatial Principal Component
+          Analysis (sPCA); accessible from R by typing <span
+            style="font-family: monospace; color: rgb(255, 0, 0);">adegenetTutorial</span><span
+            style="font-family: monospace; color: rgb(255, 0, 0);">("spca")</span>.</li>
       </ul>
     </div>
     <div style="margin-left: 40px;"> <span style="color: rgb(0, 102,
-        0);"><small>*(note:from adegenet 1.4-0, these tutorials replace
-          the vignettes which used to be part of the package)</small></span><br>
+        0);"><small>*(note: since adegenet 1.4-0, these tutorials
+          replace the vignettes which used to be part of the package)</small></span><br>
            <br>
       <span style="font-weight: bold; color: rgb(0, 102, 0);"><br>
         Lectures and practicals</span><br>
@@ -141,6 +141,7 @@
 
 
 
+
         1</a> [<a href="files/practical-day1.1.2-allcmd.pdf">version
         with all commands</a>]<br>
           > <a href="files/practical-day2.1.3.pdf">practical
@@ -162,6 +163,7 @@
 
 
 
+
         2</a> [<a href="files/practical-day2.1.3-allcmd.pdf">version
         with all commands</a>]<br>
           > <a href="files/practical-day3.1.2.pdf">practical
@@ -183,6 +185,7 @@
 
 
 
+
         3</a><br>
       <br>
       - MRC methodological session: Introduction to phylogenetics:<br>
@@ -220,6 +223,7 @@
 
 
 
+
         Epidemiology</span> / <i>Public Health</i>: <span
         style="font-weight: bold;">Introduction to phylogenetics</span>.<br>
       (last updated on the 15/13/2013)<br>
@@ -245,6 +249,7 @@
 
 
 
+
         Epidemiology</span> / <i>Public Health</i>: <span
         style="font-weight: bold;">Introduction to multivariate analysis
         / bacterial GWAS</span>.<br>
@@ -268,6 +273,7 @@
 
 
 
+
       </b><b><i>outbreaker</i></b> <br>
           > <a href="files/GenEpiTalk.1.0.pdf">talk</a><br>
           > <a href="files/outbreakPractical.1.3.pdf">practical</a><br>
@@ -309,6 +315,7 @@
 
 
 
+
       <a href="files/hackLib/README">README</a> <br>
       <br>
       <br>

Modified: www/files/tutorial-basics.pdf
===================================================================
--- www/files/tutorial-basics.pdf	2014-03-19 16:36:10 UTC (rev 1163)
+++ www/files/tutorial-basics.pdf	2014-03-19 16:46:17 UTC (rev 1164)
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[TRUNCATED]

To get the complete diff run:
    svnlook diff /svnroot/adegenet -r 1164

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