[adegenet-commits] r568 - pkg/man

[noreply at r-forge.r-project.org]

Author: jombart
Date: 2010-02-12 16:56:27 +0100 (Fri, 12 Feb 2010)
New Revision: 568

Modified:
   pkg/man/dapc.Rd
   pkg/man/dapcIllus.Rd
   pkg/man/find.clusters.Rd
Log:
Last changes to the doc. DAPC and co. are OK now.


Modified: pkg/man/dapc.Rd
===================================================================
--- pkg/man/dapc.Rd	2010-02-12 15:31:18 UTC (rev 567)
+++ pkg/man/dapc.Rd	2010-02-12 15:56:27 UTC (rev 568)
@@ -36,8 +36,8 @@
 }
 \usage{
 \method{dapc}{data.frame}(x, grp, n.pca=NULL, n.da=NULL, center=TRUE,
-    scale=FALSE,var.contrib=FALSE,
-    pca.select=c("nbEig","percVar"), perc.pca=NULL)
+     scale=FALSE,var.contrib=FALSE,
+     pca.select=c("nbEig","percVar"), perc.pca=NULL)
 
 \method{dapc}{matrix}(x, \ldots)
 

Modified: pkg/man/dapcIllus.Rd
===================================================================
--- pkg/man/dapcIllus.Rd	2010-02-12 15:31:18 UTC (rev 567)
+++ pkg/man/dapcIllus.Rd	2010-02-12 15:56:27 UTC (rev 568)
@@ -23,19 +23,27 @@
   \code{dapcIllus} is list of 4 components being all genind objects.
 }
 \source{
-  Jombart, T., Devillard, S. and Balloux, F.
-Discriminant analysis of principal components: a new method for the analysis of
-genetically structured populations. Submitted to \emph{PLoS genetics}.
+  Jombart, T., Devillard, S. and Balloux, F.  Discriminant analysis of
+  principal components: a new method for the analysis of genetically
+  structured populations. Submitted to \emph{PLoS genetics}.
 
 }
 \author{
   Thibaut Jombart \email{t.jombart at imperial.ac.uk}
 }
-\seealso{ \code{\link{dapc}}, \code{\link{eHGDP}},  \code{\link{H3N2}}}
+\seealso{
+  - \code{\link{dapc}}: implements the DAPC.
+
+  - \code{\link{eHGDP}}: dataset illustrating the DAPC and \code{find.clusters}.
+
+  - \code{\link{H3N2}}: dataset illustrating the DAPC.
+
+  - \code{\link{find.clusters}}: to identify clusters without prior.
+}
 \references{
-   Jombart, T., Devillard, S. and Balloux, F.
-Discriminant analysis of principal components: a new method for the analysis of
-genetically structured populations. Submitted to \emph{PLoS genetics}.
+   Jombart, T., Devillard, S. and Balloux, F.  Discriminant analysis of
+   principal components: a new method for the analysis of genetically
+   structured populations. Submitted to \emph{PLoS genetics}.
 }
 \examples{
 if(require(MASS) & require(ade4)){

Modified: pkg/man/find.clusters.Rd
===================================================================
--- pkg/man/find.clusters.Rd	2010-02-12 15:31:18 UTC (rev 567)
+++ pkg/man/find.clusters.Rd	2010-02-12 15:56:27 UTC (rev 568)
@@ -156,7 +156,7 @@
 \seealso{
   - \code{\link{dapc}}: implements the DAPC.
 
-  - \code{\link{dapcIllys}}: dataset illustrating the DAPC and \code{find.clusters}.
+  - \code{\link{dapcIllus}}: dataset illustrating the DAPC and \code{find.clusters}.
 
   - \code{\link{eHGDP}}: dataset illustrating the DAPC and \code{find.clusters}.