[adegenet-commits] r737 - www
noreply at r-forge.r-project.org
noreply at r-forge.r-project.org
Mon Dec 13 11:44:31 CET 2010
Author: jombart
Date: 2010-12-13 11:44:31 +0100 (Mon, 13 Dec 2010)
New Revision: 737
Added:
www/documentation.html
Log:
got it back
Added: www/documentation.html
===================================================================
--- www/documentation.html (rev 0)
+++ www/documentation.html 2010-12-13 10:44:31 UTC (rev 737)
@@ -0,0 +1,122 @@
+<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN">
+<html>
+<head>
+ <meta content="text/html; charset=ISO-8859-1"
+ http-equiv="content-type">
+ <title>documentation</title>
+<script type="text/javascript">
+
+ var _gaq = _gaq || [];
+ _gaq.push(['_setAccount', 'UA-20083187-1']);
+ _gaq.push(['_trackPageview']);
+
+ (function() {
+ var ga = document.createElement('script'); ga.type = 'text/javascript'; ga.async = true;
+ ga.src = ('https:' == document.location.protocol ? 'https://ssl' : 'http://www') + '.google-analytics.com/ga.js';
+ var s = document.getElementsByTagName('script')[0]; s.parentNode.insertBefore(ga, s);
+ })();
+</script>
+</head>
+<body>
+<br>
+<br>
+<br>
+<div style="margin-left: 40px;">As a <span
+ style="text-decoration: underline;"><a href="http://www.r-project.org/"
+ target="_top"><img alt="" src="images/R.png"
+ style="border: 0px solid ; width: 30px; height: 23px;"></a></span>
+package, each component of adegenet is documented in help pages. As a
+starting point, one can type <span
+ style="font-family: monospace; font-weight: bold;">?adegenet</span> in
+R to get an overview of package. <br>
+</div>
+<br>
+<div style="margin-left: 40px;"><span
+ style="font-family: monospace; font-weight: bold;"></span><span
+ style="font-family: monospace; font-weight: bold;"></span>The
+following other ressources are available:<br>
+- the adegenet <span style="font-weight: bold;">manual</span> (<a
+ href="files/adegenet-manual.pdf">pdf</a>), which compiles all the
+documentation of the package.<br>
+- the adegenet <span style="font-weight: bold;">tutorial</span> (<a
+ href="files/tutorial.pdf">pdf</a>), which goes through the main
+functionalities of the package. Regularly updated.<br>
+- <span style="font-weight: bold;">files</span> <span
+ style="font-weight: bold;">required</span> for some parts of the
+tutorial<br>
+ > <a href="files/AFLP.txt">AFLP.txt</a>:
+a
+toy
+dataset
+reproducing
+AFLP
+data
+<br>
+ > <a href="files/haplo.txt">haplo.txt</a>:
+a
+toy
+dataset
+reproducing
+haploid
+data
+<br>
+ > <a href="files/triplo.txt">triplo.txt</a>:
+a
+toy
+dataset
+reproducing
+triploid
+data
+<br>
+- <a href="files/worksOnlyInDiploids.txt">worksOnyInDiploids.txt</a>:
+the list of <span style="font-weight: bold;">functions</span> working <span
+ style="font-weight: bold;">only for diploid</span> genotypes <br>
+- a <span style="font-weight: bold;">sPCA tutorial</span> (<a
+ href="files/tutorial-spca.pdf">pdf</a>), showing how to use the
+spatial Principal Component Analysis (Jombart et al. 2008)<br>
+- globaldiv summer school 2009, Piacenza, Italie: <a
+ href="files/globaldiv-TJ.1.3.pdf">talk</a>
+- <a href="files/globaldiv-PC.1.3.pdf">practical course</a><br>
+- Master 2 "Ecology, Evolution, Biometry", Lyon, France: <a
+ href="files/talk-E2B.1.0.pdf">talk</a> - <a href="files/TD-E2B.pdf">practical
+course</a><br>
+- One-week course on Genetic Data Analysis, Bogota, Colombia: <br>
+ > <a href="files/day1.1.2.pdf">lecture 1</a>:
+methodological overview<br>
+ > <a href="files/day2.1.3.pdf">lecture
+2</a>: finding clusters, using cluster information<br>
+ > <a href="files/day3.1.2.pdf">lecture 3</a>:
+spatial genetics<br>
+ > <a href="files/practical-day1.1.2.pdf">practical
+1</a> [<a href="files/practical-day1.1.2-allcmd.pdf">version with all
+commands</a>]<br>
+ >
+<a href="files/practical-day2.1.3.pdf">practical 2</a> [<a
+ href="files/practical-day2.1.3-allcmd.pdf">version with all commands</a>]<br>
+ > <a href="files/practical-day3.1.2.pdf">practical
+3</a><br>
+<br>
+Some information can also be found from the archives of the <span
+ style="font-weight: bold;">adegenet forum</span>; just enter your
+keywords below:<br>
+<center>
+<form method="get" action="http://www.google.com/search">
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+ value="lists.r-forge.r-project.org/pipermail/adegenet-forum/"
+ type="hidden"> <input name="pbil" value="Google search" type="submit"></div>
+</form>
+</center>
+See the '<a href="contact.html">contact</a>' section of this website
+for further information about this mailing list.<br>
+<br>
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+<span style="color: rgb(255, 0, 0);"></span></div>
+</body>
+</html>
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