[Zooimage-commits] r171 - pkg/zooimage/src/data_fitvis

[noreply at r-forge.r-project.org]

Author: romain
Date: 2009-06-10 13:10:32 +0200 (Wed, 10 Jun 2009)
New Revision: 171

Removed:
   pkg/zooimage/src/data_fitvis/FITVIS_batch.ijm
   pkg/zooimage/src/data_fitvis/S04.2008-03-10.300F4X3/
   pkg/zooimage/src/data_fitvis/batchExampleParameters.csv
Log:
removed unnecessary files

Deleted: pkg/zooimage/src/data_fitvis/FITVIS_batch.ijm
===================================================================
--- pkg/zooimage/src/data_fitvis/FITVIS_batch.ijm	2009-06-10 11:10:03 UTC (rev 170)
+++ pkg/zooimage/src/data_fitvis/FITVIS_batch.ijm	2009-06-10 11:10:32 UTC (rev 171)
@@ -1,98 +0,0 @@
-// this macro can run this from the command line
-//
-// MacOSX  assumes current directory is /Applications/ImageJ
-//  java -jar -mx256m ImageJ.app/Contents/Resources/Java/ij.jar -macro plugins/FITVIS/FITVIS_batch.ijm /Users/Shared/data/FIT_VIS_kevin/test-3/test-largest/batchExampleParameters.csv
-//
-// WIndows XP
-// ??
-
-print("FITVIS_Batch.ijm");
-
-bfile = getArgument();
-//print("argument="+bfile);
-
-if (lengthOf(bfile) == 0){
-  bfile = File.openDialog("Select the batch parameters file");
-}
-data = File.openAsString(bfile);
-data = replace(data, "\"", "");
-
-dir = File.getParent(bfile) + File.separator();
-
-arg = split(data, "\n");
-n = arg.length-1;
-names = split(arg[0], ",");
-
-for (i = 0; i<n; i++){
-	closeImages();
-	a = split(arg[i+1], ",");
-	s = assembleParameters(dir, names, a);
-	//s = assembleParameters(arg[0], arg[i+1]);
-	run("FITVIS ", s);
-}
-
-
-function assembleParameters(dir, names, s){
-	//select,interval,pixelsize,minsize,maxsize,use,thresholddark,thresholdlight,
-	//fill,largest,vignettes,scalebar,enhance,outline,masks,verbose
-	r = "";
-	//names = split(inNames,",");
-	//s = split(inS, ",");
-	for (i=0;i<names.length;i++){
-		if (names[i]=="select"){
-			if (lengthOf(s[i]) != 0){r= r + "select="+dir+s[i];}
-		} else if (names[i]=="interval"){
-      r = r + " interval=" + s[i];
-		} else if (names[i]=="pixelsize"){
-		  r = r + " pixelsize="+s[i];
-		} else if (names[i] == "minsize"){
-		  r = r + " minsize="+s[i];
-		} else if (names[i]=="maxsize"){
-		  r = r + " maxsize="+s[i];
-	  } else if (names[i]=="distance"){
-		  r = r + " distance="+s[i];
-		} else if (names[i]=="use"){
-		  r = r + " use="+s[i];
-		} else if (names[i]=="thresholddark"){
-		  r = r + " thresholddark="+s[i];
-		} else if (names[i] == "thresholdlight"){
-		  r = r + " thresholdlight=" + s[i];
-		} else if (names[i]=="fill"){
-		  if (s[i] == "TRUE") { r = r + " fill";}
-		} else if (names[i]=="largest"){
-		  if (s[i]=="TRUE") {r = r + " largest";}
-		} else if (names[i] == "vignettes"){
-		  if (s[i]=="TRUE") {r = r+ " vignettes";}
-		} else if (names[i] == "scalebar"){
-		  if (s[i]=="TRUE") {r = r + " scalebar";}
-		} else if (names[i] == "enhance"){
-		  if (s[i]=="TRUE") {r = r + " enhance";}
-		} else if (names[i] == "outline"){
-		  if (s[i]=="TRUE") {r = r + " outline";}
-		} else if (names[i] == "masks"){
-		  if (s[i]=="TRUE") {r = r + " masks";}
-		} else if (names[i] == "verbose"){
-		  if (s[i]=="TRUE") {r = r + " verbose";}
-		} else if (names[i] == "log") {
-		  if (s[i]=="TRUE") {r = r + "log";}
-		} else if (names[i] == "batch"){
-		  if (s[i]=="TRUE") {r = r + " batch";}  
-		} else {
-		  print("Parameter not recognized: " + names[i]);
-		}
-	}//i-loop
-
-  //if (indexOf(r, " ") == 0) {r = substring(r, 1);}
-    
-	return r;
-}
-
-//closes all of the image windows
-function closeImages(){
-  while (nImages()>0) {
-    selectImage(nImages());  
-    run("Close");
-  }
-  return;
-}
-

Deleted: pkg/zooimage/src/data_fitvis/batchExampleParameters.csv
===================================================================
--- pkg/zooimage/src/data_fitvis/batchExampleParameters.csv	2009-06-10 11:10:03 UTC (rev 170)
+++ pkg/zooimage/src/data_fitvis/batchExampleParameters.csv	2009-06-10 11:10:32 UTC (rev 171)
@@ -1,2 +0,0 @@
-select,interval,pixelsize,minsize,maxsize,use,thresholddark,thresholdlight,fill,largest,vignettes,scalebar,enhance,outline,masks,verbose
-data/S04.2008-03-10.300F4X3-2/data_export.csv,120,1.7076,25,2000,dark,25,25,FALSE,TRUE,TRUE,FALSE,FALSE,TRUE,TRUE,TRUE