[Vennerable-commits] r51 - in pkg/Vennerable: R inst/doc tests

Sun Sep 13 00:59:24 CEST 2009

Author: js229
Date: 2009-09-13 00:59:22 +0200 (Sun, 13 Sep 2009)
New Revision: 51

Added:
   pkg/Vennerable/inst/doc/Venn.pdf
   pkg/Vennerable/tests/bug0000no11.R
Modified:
   pkg/Vennerable/R/02TissueDrawing.R
   pkg/Vennerable/inst/doc/TissueDrawingTest.Rnw
   pkg/Vennerable/inst/doc/TissueDrawingTest.pdf
   pkg/Vennerable/inst/doc/Venn.Rnw
   pkg/Vennerable/tests/bug06492CEuler.R
Log:
update pdfs, which seem to compile

Modified: pkg/Vennerable/R/02TissueDrawing.R
===================================================================

--- pkg/Vennerable/R/02TissueDrawing.R	2009-09-12 12:11:50 UTC (rev 50)
+++ pkg/Vennerable/R/02TissueDrawing.R	2009-09-12 22:59:22 UTC (rev 51)
@@ -664,7 +664,7 @@
 	} else {
 		edges <- drawing at faceList[[faceName]] 
 	}
-	if (unsigned) { edges <- sub("^-","",edges); edges <- unique(edges) }
+	if (unsigned) { edges <- sub("^-","",edges);  }
 	
 	edges
 }
@@ -1775,7 +1775,7 @@
 
 	foundList <- list()
 	
-	for ( edgeName in .faceEdgeNames(drawing,faceName,unsigned=TRUE) ) {
+	for ( edgeName in unique(.faceEdgeNames(drawing,faceName,unsigned=TRUE)) ) {
 		faceEdge <- drawing at edgeList[[edgeName]]
 		found <- .findIntersection(chord,faceEdge)
 		foundList[[edgeName]] <- found
@@ -2134,6 +2134,8 @@
 }
 
 remove.nonintersectionpoints <- function(drawing) {
+	# a non intersection point is a named point (usually from when the face was a single edge)
+	# at which there are no intersections with any other sets
 	for (fname in .faceNames(drawing)) {
 		edgesbySet <- list()
 		for (setname in names(drawing at setList)) {
@@ -2143,8 +2145,15 @@
 
 #cat(fname,"\n")
 		fedges <- (.faceEdgeNames(drawing,fname,unsigned=TRUE))
+		if (length(fedges)<2) { # only one edge in face so cant have any nonintersection points
+			next
+		}
 		nedges <-  (.faceEdgeNames(drawing,fname,unsigned=FALSE))
-		sedges <- sapply(fedges,function(x){edgedf[edgedf$edgeName==x,"Set"]})
+		sedges <- sapply(fedges,function(x){
+			res <- edgedf[edgedf$edgeName==x,"Set"]
+			if (length(res)==0) { res <- "Invisible"}
+			res
+		})
 		edf <- data.frame(edgeName=fedges,edgeSigned=nedges,Set=sedges,stringsAsFactors=FALSE)
 		edf <- rbind(edf,edf[1,])
 		edf$dup <- FALSE

Modified: pkg/Vennerable/inst/doc/TissueDrawingTest.Rnw
===================================================================
--- pkg/Vennerable/inst/doc/TissueDrawingTest.Rnw	2009-09-12 12:11:50 UTC (rev 50)
+++ pkg/Vennerable/inst/doc/TissueDrawingTest.Rnw	2009-09-12 22:59:22 UTC (rev 51)
@@ -79,7 +79,8 @@
 A sector is a segment of a circle, defined by two points, 
 together with the convention that a right-handed sector goes clockwise (Figure \ref{fig:vds}).
 Angles are all interpreted in the same way as \texttt{atan2}, ie clockwise from the line $y=0$.
-The angles of the beginning $\theta_f$ and end $\theta_t$ of the segment obey $2\pi\geq \theta_f >  0$ and $\theta_f>\theta_t>-2*pi$.
+The angles of the beginning $\theta_f$ and end $\theta_t$ of the segment
+ obey $2\pi\geq \theta_f >  0$ and $\theta_f>\theta_t>-2*\pi$.
 
 
 \begin{figure}[H]\begin{center}
@@ -150,7 +151,7 @@
 grid.points(x=aPoint[1],y=aPoint[2],default.units="native",pch=4)
 @
 \caption{A face which doesn't contain its centroid}. 
-\label{fig:vds}
+\label{fig:vdsnoc}
 \end{center}\end{figure}
 
 \section{Joining disjoint faces}

Modified: pkg/Vennerable/inst/doc/TissueDrawingTest.pdf
===================================================================
--- pkg/Vennerable/inst/doc/TissueDrawingTest.pdf	2009-09-12 12:11:50 UTC (rev 50)
+++ pkg/Vennerable/inst/doc/TissueDrawingTest.pdf	2009-09-12 22:59:22 UTC (rev 51)
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[TRUNCATED]

To get the complete diff run:
    svnlook diff /svnroot/vennerable -r 51
