[Rcppoctave-user] unable to install RcppOctave (Octave 3.8 Linux)

[Renaud Gaujoux]

Hi,

I have just pushed a fix for this issue, at least when installing on Octave
compiled without MPI.
Can you please try:

library(devtools)
install_github("RcppOctave", 'renozao', ref = 'develop')

Thanks.

Renaud



On 27 February 2014 22:45, kam kammon <kammon101 at hotmail.ca> wrote:

>
> Hello,
>
> I tried installed rcppoctave  from git with and without  mpi. The failure
> logs are attached.
> They were from git on Feb 23
>
> Thanks
>
> Bernard
> ------------------------------
> Date: Wed, 12 Feb 2014 15:19:51 +0200
>
> Subject: Re: [Rcppoctave-user] unable to install RcppOctave (Octave 3.8
> Linux)
> From: renaud at mancala.cbio.uct.ac.za
> To: kammon101 at hotmail.ca
>
> Putting rcppoctave-user at lists.r-forge.r-project.org in Cc of all your
> emails should do the trick (not changing the email Subject).
>
> Renaud
>
>
> On 12 February 2014 14:52, kam kammon <kammon101 at hotmail.ca> wrote:
>
> Hi Renaud,
>
> Thanks for the reply. I am currently unable to reproduce the log without
> mpi because if I remove the mpi packages it would remove a bunch of other
> things as well. But I can create a partial clone of my current system
> elsewhere and remove the mpi packages there. Since you are busy at the
> moment this can wait for a week or so.
>
> I am kind of new to this and I am not sure how to reply to you on the
> mailing list on the same thread. There is no option to "reply" apparently
> and I don't want to create a new thread by sending  another email to
> rcppoctave-user at lists.r-forge.r-project.org. Please advice.
>
> Thanks
>
> Bernard
> ------------------------------
> Date: Sun, 9 Feb 2014 10:50:05 +0200
> Subject: Re: [Rcppoctave-user] unable to install RcppOctave (Octave 3.8
> Linux)
> From: renaud at mancala.cbio.uct.ac.za
> To: kammon101 at hotmail.ca
> CC: rcppoctave-user at lists.r-forge.r-project.org
>
>
> Hi Bernard,
>
> thank you for reporting this.
> It looks like there are 2 different issues here:
>   * with mpi: this issue is due to Octave trying to compile modules with
> MPI support. I have seen this before and am not yet sure why/how to fix it.
>   * without mpi: this seems to be due to incompatibilities with 3.8, on
> which I have not tested RcppOctave
>
> I cannot look into these errors now, but will do in the next couple of
> weeks.
>
> Just to get a log of these errors for the latest dev version, can you
> please run the same installations using the version on github:
>
> library(devtools)
> install_github("RcppOctave", 'renozao', ref = 'develop')
>
> Thank you.
>
> Bests,
> Renaud
>
>
>
> On 8 February 2014 04:45, kam kammon <kammon101 at hotmail.ca> wrote:
>
> Hi, I am trying to install Rcppoctave from R with
> install.packages('RcppOctave') without success.
>
> My OS is Ubuntu 13.10. R version 3.0.2, Octave version 3.8.0 (Octave is
> compiled from source with prefix=/usr/local)
>
> I have tried installing hdf5  with mpi (libhdf5-mpi-dev,
> libhdf5-openmpi-dev and libhdf5-openmpi-7 from repository ) and without mpi
> (libhdf5-dev and libhdf5-7 from repository) and in both cases RcppOctave
> would not install.
>
> When libgdf5 is installed with mpi the install log shows
> "/usr/include/H5public.h:63:20: fatal error: mpi.h: No such file or
> directory"  while without mpi it shows a different error.
>
>
> I am attaching the installation log for both instances for further
> investigations.
>
> Not sure if this is relevant, but when hdf5 is installed with mpi Octave
> needs to be recompiled  with
>
> export CPPFLAGS="-I/usr/include/mpi -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX"
>
> Otherwise some octave-forge packages don't install.
>
>
> http://octave.1599824.n4.nabble.com/Error-installing-package-on-classdef-tip-td4658542.html#a4658460
>
> Thanks,
>
> Bernard
>
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