[FLR-list] FLBRP ( )

[Laurie Kell]

There are plots like you want
Email me you objects and I will check then for you. There is also a new
version of flbrp in fladvice
Laurie
On Mar 15, 2012 5:01 PM, "Luis Ridao" <luridao at gmail.com> wrote:

> FLR-help,
>
> I have a simple question regarding the common MSY plot.  after running
> the simulations and getting
> the results in an object of class "FLBRP"
>
> > class(cod.fwd.brp)
> [1] "FLBRP"
> attr(,"package")
> [1] "FLBRP"
> > slotNames(cod.fwd.brp)
>  [1] "model"           "params"          "refpts"          "fbar"
>  [5] "fbar.obs"        "landings.obs"    "discards.obs"    "rec.obs"
>  [9] "ssb.obs"         "stock.obs"       "profit.obs"      "landings.sel"
> [13] "discards.sel"    "bycatch.harvest" "stock.wt"        "landings.wt"
> [17] "discards.wt"     "bycatch.wt"      "m"               "mat"
> [21] "harvest.spwn"    "m.spwn"          "availability"    "price"
> [25] "vcost"           "fcost"           "name"            "desc"
> [29] "range"
>
> i was wondering how can i generate the typical yield-per-recruit graph
> (yield on
> y-axis and f on x-axis) from this object. is there any plot method for
> this?
> Just like when running this on a stock object (without
> iterations/simulations):
>
> codBrp <- FLBRP(stock,sr=codSR)
> codBrp <- brp(codBrp)
> plot(codBrp,obs=TRUE)
>
>
> I try :
>
> plot(cod.fwd.brp)
> plot(refpts(cod.fwd.brp))
>
> but none of them work ...
>
> thanks in advance,
> Luis
>
> On Thu, Mar 15, 2012 at 2:55 PM, Luis Ridao Cruz <Luisr at hav.fo> wrote:
> >
> >
> > ---------- Forwarded message ----------
> > From: Luis Ridao <luridao at gmail.com>
> > To: flr-list at flr-project.org
> > Cc:
> > Date: Thu, 15 Mar 2012 14:45:18 +0000
> > Subject: Re: [FLR-list] FLBRP
> > thanks Iago
> >
> > best,
> > Luis
> >
> > On Thu, Mar 15, 2012 at 2:08 PM, Iago Mosqueira
> > <iago.mosqueira-sanchez at jrc.ec.europa.eu> wrote:
> >> Hi,
> >>
> >>
> >> Thanks for this. I have now fixed this in SVN. The Rdevel repository
> does
> >> not contain FLBRP, as the methods and classes there are now defined in
> >> FLAdvice. So try
> >>
> >> install.packages('FLAdvice', repos="http://flr-project.org/Rdevel")
> >>
> >> or update your copy of SVN and try FLBRP from there
> >>
> >> Cheers,
> >>
> >>
> >> Iago
> >>
> >>
> >> On 03/15/2012 02:28 PM, Luis Ridao wrote:
> >>>
> >>> FLR-help,
> >>>
> >>> Package FLBRP cannot be installed via:
> >>>
> >>> install.packages(repos="http://flr-project.org/Rdevel")
> >>>
> >>> I tried it to installed from source and failed:
> >>>
> >>>> R CMD check FLBRP
> >>>
> >>> * using log directory
> >>> ‘/home/luridao/Documents/D/R_programs/Packages/FLR/FLBRP.Rcheck’
> >>> * using R version 2.14.2 (2012-02-29)
> >>> * using platform: i486-pc-linux-gnu (32-bit)
> >>> * using session charset: UTF-8
> >>> * checking for file ‘FLBRP/DESCRIPTION’ ... OK
> >>> * this is package ‘FLBRP’ version ‘2.00’
> >>> * checking package namespace information ... OK
> >>> * checking package dependencies ... OK
> >>> * checking if this is a source package ... OK
> >>> * checking if there is a namespace ... OK
> >>> * checking for executable files ... OK
> >>> * checking whether package ‘FLBRP’ can be installed ... ERROR
> >>> Installation failed.
> >>>
> >>> Running on a linux machine (ubuntu 10.04.04) and R version R.2.14.2
> >>>
> >>> There is no way around this?
> >>>
> >>> Thanks in advance
> >>> _______________________________________________
> >>> flr-list mailing list
> >>> flr-list at flr-project.org
> >>> https://lists.r-forge.r-project.org/cgi-bin/mailman/listinfo/flr-list
> >>
> >>
> >>
> >> --
> >> Dr Iago Mosqueira
> >>
> >> European Commission – Joint Research Center
> >> Institute for the Protection and Security of the Citizen (IPSC)
> >> Maritime Affairs Unit FISHREG – Scientific Support to Fisheries
> >> TP 051, Via Enrico Fermi 2749
> >> I-21027 Ispra (VA), Italy
> >>
> >> Office : +39 0332 785413
> >> Fax: +39 0332 789658
> >>
> >> iago.mosqueira at jrc.ec.europa.eu
> >>
> >> http://fishreg.jrc.ec.europa.eu/home
> >>
> >> _______________________________________________
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> >
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