<p>There are plots like you want<br>
Email me you objects and I will check then for you. There is also a new version of flbrp in fladvice<br>
Laurie</p>
<div class="gmail_quote">On Mar 15, 2012 5:01 PM, "Luis Ridao" <<a href="mailto:luridao@gmail.com">luridao@gmail.com</a>> wrote:<br type="attribution"><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">
FLR-help,<br>
<br>
I have a simple question regarding the common MSY plot. after running<br>
the simulations and getting<br>
the results in an object of class "FLBRP"<br>
<br>
> class(cod.fwd.brp)<br>
[1] "FLBRP"<br>
attr(,"package")<br>
[1] "FLBRP"<br>
> slotNames(cod.fwd.brp)<br>
[1] "model" "params" "refpts" "fbar"<br>
[5] "fbar.obs" "landings.obs" "discards.obs" "rec.obs"<br>
[9] "ssb.obs" "stock.obs" "profit.obs" "landings.sel"<br>
[13] "discards.sel" "bycatch.harvest" "stock.wt" "landings.wt"<br>
[17] "discards.wt" "bycatch.wt" "m" "mat"<br>
[21] "harvest.spwn" "m.spwn" "availability" "price"<br>
[25] "vcost" "fcost" "name" "desc"<br>
[29] "range"<br>
<br>
i was wondering how can i generate the typical yield-per-recruit graph (yield on<br>
y-axis and f on x-axis) from this object. is there any plot method for this?<br>
Just like when running this on a stock object (without iterations/simulations):<br>
<br>
codBrp <- FLBRP(stock,sr=codSR)<br>
codBrp <- brp(codBrp)<br>
plot(codBrp,obs=TRUE)<br>
<br>
<br>
I try :<br>
<br>
plot(cod.fwd.brp)<br>
plot(refpts(cod.fwd.brp))<br>
<br>
but none of them work ...<br>
<br>
thanks in advance,<br>
Luis<br>
<br>
On Thu, Mar 15, 2012 at 2:55 PM, Luis Ridao Cruz <<a href="mailto:Luisr@hav.fo">Luisr@hav.fo</a>> wrote:<br>
><br>
><br>
> ---------- Forwarded message ----------<br>
> From: Luis Ridao <<a href="mailto:luridao@gmail.com">luridao@gmail.com</a>><br>
> To: <a href="mailto:flr-list@flr-project.org">flr-list@flr-project.org</a><br>
> Cc:<br>
> Date: Thu, 15 Mar 2012 14:45:18 +0000<br>
> Subject: Re: [FLR-list] FLBRP<br>
> thanks Iago<br>
><br>
> best,<br>
> Luis<br>
><br>
> On Thu, Mar 15, 2012 at 2:08 PM, Iago Mosqueira<br>
> <<a href="mailto:iago.mosqueira-sanchez@jrc.ec.europa.eu">iago.mosqueira-sanchez@jrc.ec.europa.eu</a>> wrote:<br>
>> Hi,<br>
>><br>
>><br>
>> Thanks for this. I have now fixed this in SVN. The Rdevel repository does<br>
>> not contain FLBRP, as the methods and classes there are now defined in<br>
>> FLAdvice. So try<br>
>><br>
>> install.packages('FLAdvice', repos="<a href="http://flr-project.org/Rdevel" target="_blank">http://flr-project.org/Rdevel</a>")<br>
>><br>
>> or update your copy of SVN and try FLBRP from there<br>
>><br>
>> Cheers,<br>
>><br>
>><br>
>> Iago<br>
>><br>
>><br>
>> On 03/15/2012 02:28 PM, Luis Ridao wrote:<br>
>>><br>
>>> FLR-help,<br>
>>><br>
>>> Package FLBRP cannot be installed via:<br>
>>><br>
>>> install.packages(repos="<a href="http://flr-project.org/Rdevel" target="_blank">http://flr-project.org/Rdevel</a>")<br>
>>><br>
>>> I tried it to installed from source and failed:<br>
>>><br>
>>>> R CMD check FLBRP<br>
>>><br>
>>> * using log directory<br>
>>> ‘/home/luridao/Documents/D/R_programs/Packages/FLR/FLBRP.Rcheck’<br>
>>> * using R version 2.14.2 (2012-02-29)<br>
>>> * using platform: i486-pc-linux-gnu (32-bit)<br>
>>> * using session charset: UTF-8<br>
>>> * checking for file ‘FLBRP/DESCRIPTION’ ... OK<br>
>>> * this is package ‘FLBRP’ version ‘2.00’<br>
>>> * checking package namespace information ... OK<br>
>>> * checking package dependencies ... OK<br>
>>> * checking if this is a source package ... OK<br>
>>> * checking if there is a namespace ... OK<br>
>>> * checking for executable files ... OK<br>
>>> * checking whether package ‘FLBRP’ can be installed ... ERROR<br>
>>> Installation failed.<br>
>>><br>
>>> Running on a linux machine (ubuntu 10.04.04) and R version R.2.14.2<br>
>>><br>
>>> There is no way around this?<br>
>>><br>
>>> Thanks in advance<br>
>>> _______________________________________________<br>
>>> flr-list mailing list<br>
>>> <a href="mailto:flr-list@flr-project.org">flr-list@flr-project.org</a><br>
>>> <a href="https://lists.r-forge.r-project.org/cgi-bin/mailman/listinfo/flr-list" target="_blank">https://lists.r-forge.r-project.org/cgi-bin/mailman/listinfo/flr-list</a><br>
>><br>
>><br>
>><br>
>> --<br>
>> Dr Iago Mosqueira<br>
>><br>
>> European Commission – Joint Research Center<br>
>> Institute for the Protection and Security of the Citizen (IPSC)<br>
>> Maritime Affairs Unit FISHREG – Scientific Support to Fisheries<br>
>> TP 051, Via Enrico Fermi 2749<br>
>> I-21027 Ispra (VA), Italy<br>
>><br>
>> Office : <a href="tel:%2B39%200332%20785413" value="+390332785413">+39 0332 785413</a><br>
>> Fax: <a href="tel:%2B39%200332%20789658" value="+390332789658">+39 0332 789658</a><br>
>><br>
>> <a href="mailto:iago.mosqueira@jrc.ec.europa.eu">iago.mosqueira@jrc.ec.europa.eu</a><br>
>><br>
>> <a href="http://fishreg.jrc.ec.europa.eu/home" target="_blank">http://fishreg.jrc.ec.europa.eu/home</a><br>
>><br>
>> _______________________________________________<br>
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