[Distr-commits] r820 - in branches/distr-2.4/pkg: SweaveListingUtils/tests/Examples distr distr/tests/Examples distrEllipse/tests/Examples distrMod/tests/Examples distrSim/tests/Examples distrTEst/tests/Examples distrTeach/tests/Examples
noreply at r-forge.r-project.org
noreply at r-forge.r-project.org
Sun May 27 19:57:19 CEST 2012
Author: stamats
Date: 2012-05-27 19:57:18 +0200 (Sun, 27 May 2012)
New Revision: 820
Modified:
branches/distr-2.4/pkg/SweaveListingUtils/tests/Examples/SweaveListingUtils-Ex.Rout.save
branches/distr-2.4/pkg/distr/DESCRIPTION
branches/distr-2.4/pkg/distr/tests/Examples/distr-Ex.Rout.save
branches/distr-2.4/pkg/distrEllipse/tests/Examples/distrEllipse-Ex.Rout.save
branches/distr-2.4/pkg/distrMod/tests/Examples/distrMod-Ex.Rout.save
branches/distr-2.4/pkg/distrSim/tests/Examples/distrSim-Ex.Rout.save
branches/distr-2.4/pkg/distrTEst/tests/Examples/distrTEst-Ex.Rout.save
branches/distr-2.4/pkg/distrTeach/tests/Examples/distrTeach-Ex.Rout.save
Log:
build, install and check without errors on R version 2.15.0 Patched (2012-05-26 r59450)
Modified: branches/distr-2.4/pkg/SweaveListingUtils/tests/Examples/SweaveListingUtils-Ex.Rout.save
===================================================================
--- branches/distr-2.4/pkg/SweaveListingUtils/tests/Examples/SweaveListingUtils-Ex.Rout.save 2012-05-27 05:04:36 UTC (rev 819)
+++ branches/distr-2.4/pkg/SweaveListingUtils/tests/Examples/SweaveListingUtils-Ex.Rout.save 2012-05-27 17:57:18 UTC (rev 820)
@@ -1,7 +1,8 @@
-R version 2.10.0 Patched (2009-11-02 r50295)
-Copyright (C) 2009 The R Foundation for Statistical Computing
+R version 2.15.0 Patched (2012-05-26 r59450) -- "Easter Beagle"
+Copyright (C) 2012 The R Foundation for Statistical Computing
ISBN 3-900051-07-0
+Platform: x86_64-unknown-linux-gnu (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
@@ -17,83 +18,18 @@
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
-> ### * <HEADER>
-> ###
-> attach(NULL, name = "CheckExEnv")
-> assign("nameEx",
-+ local({
-+ s <- "__{must remake R-ex/*.R}__"
-+ function(new) {
-+ if(!missing(new)) s <<- new else s
-+ }
-+ }),
-+ pos = "CheckExEnv")
-> ## Add some hooks to label plot pages for base and grid graphics
-> assign("base_plot_hook",
-+ function() {
-+ pp <- par(c("mfg","mfcol","oma","mar"))
-+ if(all(pp$mfg[1:2] == c(1, pp$mfcol[2]))) {
-+ outer <- (oma4 <- pp$oma[4]) > 0; mar4 <- pp$mar[4]
-+ mtext(sprintf("help(\"%s\")", nameEx()), side = 4,
-+ line = if(outer)max(1, oma4 - 1) else min(1, mar4 - 1),
-+ outer = outer, adj = 1, cex = .8, col = "orchid", las=3)
-+ }
-+ },
-+ pos = "CheckExEnv")
-> assign("grid_plot_hook",
-+ function() {
-+ grid::pushViewport(grid::viewport(width=grid::unit(1, "npc") -
-+ grid::unit(1, "lines"), x=0, just="left"))
-+ grid::grid.text(sprintf("help(\"%s\")", nameEx()),
-+ x=grid::unit(1, "npc") + grid::unit(0.5, "lines"),
-+ y=grid::unit(0.8, "npc"), rot=90,
-+ gp=grid::gpar(col="orchid"))
-+ },
-+ pos = "CheckExEnv")
-> setHook("plot.new", get("base_plot_hook", pos = "CheckExEnv"))
-> setHook("persp", get("base_plot_hook", pos = "CheckExEnv"))
-> setHook("grid.newpage", get("grid_plot_hook", pos = "CheckExEnv"))
-> assign("cleanEx",
-+ function(env = .GlobalEnv) {
-+ rm(list = ls(envir = env, all.names = TRUE), envir = env)
-+ RNGkind("default", "default")
-+ set.seed(1)
-+ options(warn = 1)
-+ .CheckExEnv <- as.environment("CheckExEnv")
-+ delayedAssign("T", stop("T used instead of TRUE"),
-+ assign.env = .CheckExEnv)
-+ delayedAssign("F", stop("F used instead of FALSE"),
-+ assign.env = .CheckExEnv)
-+ sch <- search()
-+ newitems <- sch[! sch %in% .oldSearch]
-+ for(item in rev(newitems))
-+ eval(substitute(detach(item), list(item=item)))
-+ missitems <- .oldSearch[! .oldSearch %in% sch]
-+ if(length(missitems))
-+ warning("items ", paste(missitems, collapse=", "),
-+ " have been removed from the search path")
-+ },
-+ pos = "CheckExEnv")
-> assign("ptime", proc.time(), pos = "CheckExEnv")
-> ## at least one package changes these via ps.options(), so do this
-> ## before loading the package.
-> ## Use postscript as incomplete files may be viewable, unlike PDF.
-> ## Choose a size that is close to on-screen devices, fix paper
-> grDevices::ps.options(width = 7, height = 7, paper = "a4", reset = TRUE)
-> grDevices::postscript("SweaveListingUtils-Ex.ps")
->
-> assign("par.postscript", graphics::par(no.readonly = TRUE), pos = "CheckExEnv")
-> options(contrasts = c(unordered = "contr.treatment", ordered = "contr.poly"))
+> pkgname <- "SweaveListingUtils"
+> source(file.path(R.home("share"), "R", "examples-header.R"))
> options(warn = 1)
> library('SweaveListingUtils')
Loading required package: startupmsg
-:startupmsg> Utilities for start-up messages (version 0.7)
+:startupmsg> Utilities for start-up messages (version 0.8)
:startupmsg>
:startupmsg> For more information see ?"startupmsg",
:startupmsg> NEWS("startupmsg")
:SweaveListingUtils> Utilities for Sweave together with
-:SweaveListingUtils> TeX listings package (version 0.4)
+:SweaveListingUtils> TeX listings package (version 0.6)
:SweaveListingUtils>
:SweaveListingUtils> Some functions from package 'base'
:SweaveListingUtils> are intentionally masked ---see
@@ -112,18 +48,16 @@
:SweaveListingUtils> vignette("ExampleSweaveListingUtils").
-Attaching package: 'SweaveListingUtils'
+Attaching package: ‘SweaveListingUtils’
+The following object(s) are masked from ‘package:base’:
- The following object(s) are masked from package:base :
+ library, require
- library,
- require
-
>
> assign(".oldSearch", search(), pos = 'CheckExEnv')
-> assign(".oldNS", loadedNamespaces(), pos = 'CheckExEnv')
-> cleanEx(); nameEx("SweaveListingMASK")
+> cleanEx()
+> nameEx("SweaveListingMASK")
> ### * SweaveListingMASK
>
> flush(stderr()); flush(stdout())
@@ -168,14 +102,15 @@
>
>
>
-> cleanEx(); nameEx("SweaveListingOptions")
+> cleanEx()
+> nameEx("SweaveListingOptions")
> ### * SweaveListingOptions
>
> flush(stderr()); flush(stdout())
>
> ### Name: SweaveListingOptions
> ### Title: Function to change the global options of the package
-> ### `SweaveListingUtils'
+> ### 'SweaveListingUtils'
> ### Aliases: SweaveListingOptions SweaveListingoptions
> ### getSweaveListingOption Rset Rdset Rin Rout Rcode Rcolor Rbcolor
> ### Routcolor RRecomdcolor Rcommentcolor pkg pkv Keywordstyle
@@ -209,7 +144,7 @@
[1] "{\\color{Rcommentcolor}\\ttfamily\\itshape}"
$Rset$literate
-[1] "{<-}{{$\\leftarrow$}}2{<<-}{{$\\twoheadleftarrow$}}2{~}{{$\\sim$}}1{<=}{{$\\leq$}}2{>=}{{$\\geq$}}2{^}{{$\\scriptstyle\\wedge$}}1"
+[1] "{\"}{\\texttt{\"}}1{<-}{{$\\leftarrow$}}2{<<-}{{$\\twoheadleftarrow$}}2{~}{{$\\sim$}}1{<=}{{$\\leq$}}2{>=}{{$\\geq$}}2{^}{{$\\scriptstyle\\wedge$}}1"
$Rset$alsoother
[1] "{$}"
@@ -320,7 +255,7 @@
[1] TRUE
$base.url
-[1] "http://r-forge.r-project.org/plugins/scmsvn/viewcvs.php/*checkout*/pkg/"
+[1] "http://r-forge.r-project.org/scm/viewvc.php/*checkout*/pkg/"
$addRset
[1] TRUE
@@ -360,7 +295,8 @@
>
>
>
-> cleanEx(); nameEx("SweaveListingPreparations")
+> cleanEx()
+> nameEx("SweaveListingPreparations")
> ### * SweaveListingPreparations
>
> flush(stderr()); flush(stdout())
@@ -390,12 +326,12 @@
description,details,dfn,doctype,dots,%
dontrun,dontshow,donttest,dQuote,%
email,emph,enc,encoding,enumerate,env,eqn,%
- examples,file,format,item,itemize,kbd,keyword,%
+ examples,file,format,if,ifelse,item,itemize,kbd,keyword,%
ldots,link,linkS4class,method,name,note,%
- option,pkg,preformatted,R,Rdopts,Rdversion,%
+ option,out,pkg,preformatted,R,Rdopts,Rdversion,%
references,S3method,S4method,Sexpr,samp,section,%
- seealso,source,sp,special,%
- sQuote,strong,synopsis,tab,tabular,testonly,%
+ seealso,source,sp,special,sQuote,strong,%
+ subsection,synopsis,tab,tabular,testonly,%
title,url,usage,value,var,verb},
sensitive=true,%
morecomment=[l]\%% 2008/9 Peter Ruckdeschel
@@ -406,9 +342,11 @@
\lstdefinestyle{RstyleO1}{fancyvrb=true,escapechar=`,extendedchars=false,%
language=R,%
basicstyle={\color{Rcolor}\small},%
- keywordstyle={\bf\color{Rcolor}},%
+ keywordstyle={\bf\color{Rcolor}},%Warning in print.taglist(taglist, LineLength = LineLength, offset.start = nchar(startS), :
+ Some elements of taglist are too long
+
commentstyle={\color{Rcommentcolor}\ttfamily\itshape},%
- literate={<-}{{$\leftarrow$}}2{<<-}{{$\twoheadleftarrow$}}2{~}{{$\sim$}}1{<=}{{$\leq$}}2{>=}{{$\geq$}}2{^}{{$\scriptstyle\wedge$}}1,%
+ literate={"}{\texttt{"}}1{<-}{{$\leftarrow$}}2{<<-}{{$\twoheadleftarrow$}}2{~}{{$\sim$}}1{<=}{{$\leq$}}2{>=}{{$\geq$}}2{^}{{$\scriptstyle\wedge$}}1,%
alsoother={$},%
alsoletter={.<-},%
otherkeywords={!,!=,~,$,*,\&,\%/\%,\%*\%,\%\%,<-,<<-,/},%
@@ -482,30 +420,30 @@
\def\Code#1{{\tt\color{Rcolor} #1}}
\def\file#1{{\tt #1}}
\def\pkg#1{{\tt "#1"}}
-\newcommand{\pkgversion}{{\tt 2.2}}
+\newcommand{\pkgversion}{{\tt 2.3.4}}
%------------------------------------------------------------------------------%
-Warning in kws[idxRec] <- rep(getSweaveListingOption("Recomd.Keywordstyle"), :
+Warning in setBaseOrRecommended(pkgs = pkgs) :
number of items to replace is not a multiple of replacement length
\lstdefinestyle{RstyleO2}{style=RstyleO1,%
% --------------------------
% Registration of package SweaveListingUtils
% --------------------------
-morekeywords={[2]taglist,SweaveListingPreparations,SweaveListingOptions,SweaveListingoptions,SweaveListingMASK,%
-setToBeDefinedPkgs,setBaseOrRecommended,readSourceFromRForge,readPkgVersion,lstsetRout,%
-lstsetRin,lstsetRd,lstsetRcode,lstsetRall,lstsetR,%
-lstsetLanguage,lstset,lstinputSourceFromRForge,lstdefRstyle,isBaseOrRecommended,%
-getSweaveListingOption,copySourceFromRForge,changeKeywordstyles%
+morekeywords={[2]taglist,setToBeDefinedPkgs,setBaseOrRecommended,readSourceFromRForge,readPkgVersion,%
+lstsetRout,lstsetRin,lstsetRd,lstsetRcode,lstsetRall,%
+lstsetR,lstsetLanguage,lstset,lstinputSourceFromRForge,lstdefRstyle,%
+isBaseOrRecommended,getSweaveListingOption,copySourceFromRForge,changeKeywordstyles,SweaveListingoptions,%
+SweaveListingPreparations,SweaveListingOptions,SweaveListingMASK%
},%
keywordstyle={[2]{\bf}},%
%
% --------------------------
% Registration of package startupmsg
% --------------------------
-morekeywords={[3]TOBEDONE,suppressStartupMessages,startupType,startupPackage,StartupMessage,%
-startupMessage,startupEndline,readVersionInformation,readURLInformation,pointertoNEWS,%
-onlytypeStartupMessages,NEWS,mystartupMessage,mySMHandler,infoShow,%
-buildStartupMessage%
+morekeywords={[3]suppressStartupMessages,startupType,startupPackage,startupMessage,startupEndline,%
+readVersionInformation,readURLInformation,pointertoNEWS,onlytypeStartupMessages,mystartupMessage,%
+mySMHandler,infoShow,buildStartupMessage,TOBEDONE,StartupMessage,%
+NEWS%
},%
keywordstyle={[3]{\bf}},%
%
@@ -513,71 +451,72 @@
% Registration of package stats [recommended or base]
% --------------------------
morekeywords={[4]xtabs,write.ftable,window<-,wilcox.test,weighted.residuals,%
-weighted.mean,vcov,var.test,varimax,variable.names,%
-update.formula,update.default,TukeyHSD.aov,TukeyHSD,t.test,%
-ts.union,tsSmooth,ts.plot,tsp<-,ts.intersect,%
-tsdiag,toeplitz,terms.terms,terms.formula,terms.default,%
-terms.aovlist,termplot,supsmu,summary.stepfun,summary.mlm,%
-summary.manova,summary.lm,summary.infl,summary.glm,summary.aovlist,%
-summary.aov,StructTS,stl,stepfun,stat.anova,%
-SSweibull,SSmicmen,SSlogis,SSgompertz,SSfpl,%
-SSfol,SSD,SSbiexp,SSasympOrig,SSasympOff,%
-SSasymp,splinefunH,spectrum,spec.taper,spec.pgram,%
-spec.ar,sortedXyData,smooth.spline,smoothEnds,smooth,%
-simulate,shapiro.test,setNames,selfStart,se.contrast,%
-screeplot,scatter.smooth,runmed,rstudent.lm,rstudent.glm,%
-rstandard.lm,rstandard.glm,rmultinom,residuals.lm,residuals.glm,%
-residuals.default,reshapeWide,reshapeLong,reshape,reorder,%
-rect.hclust,read.ftable,r2dtable,quasipoisson,quasibinomial,%
-quantile.default,quade.test,qqnorm.default,qbirthday,prop.trend.test,%
-prop.test,promax,print.ts,print.terms,print.logLik,%
-print.lm,print.integrate,print.infl,print.glm,print.ftable,%
-print.formula,print.family,print.density,printCoefmat,print.coefmat,%
-print.anova,princomp,predict.poly,predict.mlm,predict.lm,%
-predict.glm,prcomp,PP.test,ppr,power.t.test,%
-power.prop.test,power.anova.test,polym,poisson.test,plot.TukeyHSD,%
+weighted.mean,vcov,varimax,variable.names,var.test,%
+update.formula,update.default,tsp<-,tsdiag,tsSmooth,%
+ts.union,ts.plot,ts.intersect,toeplitz,terms.terms,%
+terms.formula,terms.default,terms.aovlist,termplot,t.test,%
+supsmu,summary.stepfun,summary.mlm,summary.manova,summary.lm,%
+summary.infl,summary.glm,summary.aovlist,summary.aov,stl,%
+stepfun,stat.anova,splinefunH,spectrum,spec.taper,%
+spec.pgram,spec.ar,sortedXyData,smoothEnds,smooth.spline,%
+smooth,simulate,shapiro.test,setNames,selfStart,%
+se.contrast,screeplot,scatter.smooth,runmed,rstudent.lm,%
+rstudent.glm,rstandard.lm,rstandard.glm,rmultinom,residuals.lm,%
+residuals.glm,residuals.default,reshapeWide,reshapeLong,reshape,%
+reorder,rect.hclust,read.ftable,rWishart,r2dtable,%
+quasipoisson,quasibinomial,quantile.default,quade.test,qqnorm.default,%
+qbirthday,prop.trend.test,prop.test,promax,printCoefmat,%
+print.ts,print.terms,print.logLik,print.lm,print.integrate,%
+print.infl,print.glm,print.ftable,print.formula,print.family,%
+print.density,print.coefmat,print.anova,princomp,predict.poly,%
+predict.mlm,predict.lm,predict.glm,prcomp,ppr,%
+power.t.test,power.prop.test,power.anova.test,polym,poisson.test,%
plot.ts,plot.stepfun,plot.spec.phase,plot.spec.coherency,plot.spec,%
-plot.mlm,plot.lm,plot.ecdf,plot.density,plclust,%
-pbirthday,pairwise.wilcox.test,pairwise.t.test,pairwise.table,pairwise.prop.test,%
-p.adjust.methods,p.adjust,pacf,order.dendrogram,oneway.test,%
-numericDeriv,NLSstRtAsymptote,NLSstLfAsymptote,NLSstClosestX,NLSstAsymptotic,%
-nls.control,nls,nlminb,naresid,naprint,%
-napredict,na.pass,na.omit,na.fail,na.exclude,%
-na.contiguous,na.action,mood.test,monthplot,model.weights,%
-model.tables,model.response,model.offset,model.matrix.lm,model.matrix.default,%
-model.matrix,model.frame.lm,model.frame.glm,model.frame.default,model.frame.aovlist,%
-model.frame,model.extract,medpolish,median.default,mcnemar.test,%
-mauchly.test,mauchley.test,mantelhaen.test,manova,makepredictcall,%
-make.link,makeARIMA,ls.print,ls.diag,logLik,%
-loess.smooth,loess.control,loess,loadings,lm.wfit.null,%
-lm.wfit,lm.influence,lm.fit.null,lm.fit,lines.ts,%
-line,lag.plot,lag,ks.test,ksmooth,%
-kruskal.test,knots,kmeans,kernel,kernapply,%
-KalmanSmooth,KalmanRun,KalmanLike,KalmanForecast,is.tskernel,%
-is.ts,is.stepfun,isoreg,is.mts,is.leaf,%
+plot.mlm,plot.lm,plot.ecdf,plot.density,plot.TukeyHSD,%
+plclust,pbirthday,pairwise.wilcox.test,pairwise.table,pairwise.t.test,%
+pairwise.prop.test,pacf,p.adjust.methods,p.adjust,order.dendrogram,%
+optimHess,oneway.test,numericDeriv,nobs,nls.control,%
+nls,nlminb,naresid,naprint,napredict,%
+na.pass,na.omit,na.fail,na.exclude,na.contiguous,%
+na.action,mood.test,monthplot,model.weights,model.tables,%
+model.response,model.offset,model.matrix.lm,model.matrix.default,model.matrix,%
+model.frame.lm,model.frame.glm,model.frame.default,model.frame.aovlist,model.frame,%
+model.extract,medpolish,median.default,mcnemar.test,mauchly.test,%
+mauchley.test,mantelhaen.test,manova,makepredictcall,makeARIMA,%
+make.link,ls.print,ls.diag,logLik,loess.smooth,%
+loess.control,loess,loadings,lm.wfit.null,lm.wfit,%
+lm.influence,lm.fit.null,lm.fit,lines.ts,line,%
+lag.plot,lag,ksmooth,ks.test,kruskal.test,%
+knots,kmeans,kernel,kernapply,isoreg,%
+is.tskernel,is.ts,is.stepfun,is.mts,is.leaf,%
is.empty.model,inverse.gaussian,interaction.plot,integrate,influence.measures,%
-HoltWinters,heatmap,hclust,hatvalues.lm,hatvalues,%
-glm.fit.null,glm.fit,glm.control,getInitial,get_all_vars,%
+heatmap,hclust,hatvalues.lm,hatvalues,glm.fit.null,%
+glm.fit,glm.control,get_all_vars,getInitial,getCall,%
friedman.test,fligner.test,fitted.values,fisher.test,filter,%
factor.scope,factanal,expand.model.frame,estVar,embed,%
eff.aovlist,ecdf,dummy.coef,drop.terms,drop.scope,%
-dmultinom,dist,diff.ts,diffinv,df.residual,%
-df.kernel,dfbeta,deriv.formula,deriv.default,deriv3.formula,%
-deriv3.default,deriv3,density.default,dendrapply,delete.response,%
-decompose,cutree,cpgram,cov.wt,cov2cor,%
-cor.test,cophenetic,cooks.distance,contr.treatment,contr.sum,%
-contr.SAS,contr.poly,contr.helmert,contrasts<-,constrOptim,%
+dmultinom,dist,diffinv,diff.ts,dfbeta,%
+df.residual,df.kernel,deriv3.formula,deriv3.default,deriv3,%
+deriv.formula,deriv.default,density.default,dendrapply,delete.response,%
+decompose,cutree,cpgram,cov2cor,cov.wt,%
+cor.test,cophenetic,cooks.distance,contrasts<-,contr.treatment,%
+contr.sum,contr.poly,contr.helmert,contr.SAS,constrOptim,%
confint.default,confint,complete.cases,cmdscale,clearNames,%
chisq.test,ccf,case.names,cancor,bw.ucv,%
-bw.SJ,bw.nrd0,bw.nrd,bw.bcv,Box.test,%
-biplot,binom.test,bartlett.test,bandwidth.kernel,as.ts,%
-as.stepfun,asOneSidedFormula,as.hclust,as.formula,as.dist,%
-as.dendrogram,ar.yw,ar.ols,ar.mle,ARMAtoMA,%
-ARMAacf,arima.sim,arima0.diag,arima0,arima,%
-ar.burg,ar,ansari.test,anova.mlm,anova.lmlist,%
-anova.lm,anovalist.lm,anova.glmlist,anova.glm,AIC,%
-aggregate.ts,aggregate.default,aggregate.data.frame,add.scope,addmargins,%
-acf2AR,acf%
+bw.nrd0,bw.nrd,bw.bcv,bw.SJ,biplot,%
+binom.test,bartlett.test,bandwidth.kernel,asOneSidedFormula,as.ts,%
+as.stepfun,as.hclust,as.formula,as.dist,as.dendrogram,%
+arima0.diag,arima0,arima.sim,arima,ar.yw,%
+ar.ols,ar.mle,ar.burg,ar,ansari.test,%
+anovalist.lm,anova.mlm,anova.lmlist,anova.lm,anova.glmlist,%
+anova.glm,aggregate.ts,aggregate.default,aggregate.data.frame,addmargins,%
+add.scope,acf2AR,acf,TukeyHSD.aov,TukeyHSD,%
+StructTS,SSweibull,SSmicmen,SSlogis,SSgompertz,%
+SSfpl,SSfol,SSbiexp,SSasympOrig,SSasympOff,%
+SSasymp,SSD,PP.test,NLSstRtAsymptote,NLSstLfAsymptote,%
+NLSstClosestX,NLSstAsymptotic,KalmanSmooth,KalmanRun,KalmanLike,%
+KalmanForecast,HoltWinters,Box.test,BIC,ARMAtoMA,%
+ARMAacf,AIC%
},%
keywordstyle={[4]{\bf\color{RRecomdcolor}}},%
%
@@ -585,35 +524,39 @@
% Registration of package graphics [recommended or base]
% --------------------------
morekeywords={[5]xspline,text.default,stripchart,strheight,split.screen,%
-spineplot,smoothScatter,points.default,plot.xy,plot.window,%
-plot.new,plot.design,plot.default,pie,panel.smooth,%
-pairs.default,lines.default,layout.show,image.default,hist.default,%
-grconvertY,grconvertX,fourfoldplot,filled.contour,erase.screen,%
-dotchart,contour.default,co.intervals,close.screen,clip,%
-cdplot,boxplot.matrix,boxplot.default,barplot.default,axTicks,%
-axis.POSIXct,axis.Date,Axis,assocplot%
+spineplot,smoothScatter,rasterImage,polypath,points.default,%
+plot.xy,plot.window,plot.new,plot.function,plot.design,%
+plot.default,pie,panel.smooth,pairs.default,lines.default,%
+layout.show,image.default,hist.default,grconvertY,grconvertX,%
+fourfoldplot,filled.contour,erase.screen,dotchart,contour.default,%
+co.intervals,close.screen,clip,cdplot,boxplot.matrix,%
+boxplot.default,barplot.default,axis.POSIXct,axis.Date,axTicks,%
+assocplot,Axis%
},%
keywordstyle={[5]{\bf\color{RRecomdcolor}}},%
%
% --------------------------
% Registration of package grDevices [recommended or base]
% --------------------------
-morekeywords={[6]xyz.coords,xyTable,xy.coords,xfig,X11.options,%
-X11Fonts,X11Font,Type1Font,trans3d,topo.colors,%
-tiff,terrain.colors,svg,setPS,setEPS,%
-savePlot,rgb2hsv,replayPlot,recordPlot,recordGraphics,%
-quartz.options,quartzFonts,quartzFont,quartz,ps.options,%
-postscriptFonts,postscriptFont,png,pdf.options,pdfFonts,%
-pdf,nclass.Sturges,nclass.scott,nclass.FD,n2mfrow,%
-make.rgb,jpeg,Hershey,heat.colors,hcl,%
-grey.colors,gray.colors,graphics.off,getGraphicsEvent,extendrange,%
-embedFonts,dev.size,dev.set,dev.print,dev.prev,%
-dev.off,dev.next,dev.new,dev.list,dev.interactive,%
-deviceIsInteractive,dev.cur,dev.copy2pdf,dev.copy2eps,dev.copy,%
-dev.control,devAskNewPage,densCols,convertColor,contourLines,%
-colorspaces,colorRampPalette,colorRamp,colorConverter,col2rgb,%
-cm.colors,CIDFont,check.options,cairo_ps,cairo_pdf,%
-boxplot.stats,bmp,blues9,bitmap,as.graphicsAnnot%
+morekeywords={[6]xyz.coords,xyTable,xy.coords,xfig,trans3d,%
+topo.colors,tiff,terrain.colors,svg,setPS,%
+setGraphicsEventHandlers,setGraphicsEventEnv,setEPS,savePlot,rgb2hsv,%
+replayPlot,recordPlot,recordGraphics,quartzFonts,quartzFont,%
+quartz.options,quartz,ps.options,postscriptFonts,postscriptFont,%
+png,pdfFonts,pdf.options,pdf,nclass.scott,%
+nclass.Sturges,nclass.FD,n2mfrow,make.rgb,jpeg,%
+is.raster,heat.colors,hcl,grey.colors,gray.colors,%
+graphics.off,getGraphicsEventEnv,getGraphicsEvent,extendrange,embedFonts,%
+deviceIsInteractive,devAskNewPage,dev.size,dev.set,dev.print,%
+dev.prev,dev.off,dev.next,dev.new,dev.list,%
+dev.interactive,dev.hold,dev.flush,dev.cur,dev.copy2pdf,%
+dev.copy2eps,dev.copy,dev.control,dev.capture,dev.capabilities,%
+densCols,convertColor,contourLines,colorspaces,colorRampPalette,%
+colorRamp,colorConverter,col2rgb,cm.colors,check.options,%
+cairo_ps,cairo_pdf,boxplot.stats,bmp,blues9,%
+bitmap,axisTicks,as.raster,as.graphicsAnnot,adjustcolor,%
+X11Fonts,X11Font,X11.options,Type1Font,Hershey,%
+CIDFont%
},%
keywordstyle={[6]{\bf\color{RRecomdcolor}}},%
%
@@ -621,64 +564,67 @@
% Registration of package utils [recommended or base]
% --------------------------
morekeywords={[7]zip.file.extract,wsbrowser,write.table,write.socket,write.csv2,%
-write.csv,vignette,View,url.show,URLencode,%
-URLdecode,upgrade,update.packageStatus,update.packages,unzip,%
-untar,unstack,type.convert,txtProgressBar,toLatex,%
-toBibtex,timestamp,tar,tail.matrix,tail,%
-SweaveSyntConv,SweaveSyntaxNoweb,SweaveSyntaxLatex,SweaveHooks,Sweave,%
-summaryRprof,strOptions,str,Stangle,stack,%
-setTxtProgressBar,setRepositories,setBreakpoint,sessionInfo,select.list,%
-savehistory,RweaveTryStop,RweaveLatexWritedoc,RweaveLatexSetup,RweaveLatexOptions,%
-RweaveLatexFinish,RweaveLatex,RweaveEvalWithOpt,RweaveChunkPrefix,RtangleWritedoc,%
-RtangleSetup,Rtangle,rtags,RSiteSearch,RShowDoc,%
-Rprofmem,Rprof,remove.packages,relist,recover,%
-read.table,read.socket,read.fwf,read.fortran,read.DIF,%
-read.delim2,read.delim,read.csv2,read.csv,readCitationFile,%
-rc.status,rc.settings,rc.options,rc.getOption,promptPackage,%
-promptData,personList,person,packageStatus,package.skeleton,%
-packageDescription,package.contents,old.packages,object.size,nsl,%
-normalizePath,news,new.packages,modifyList,mirror2html,%
-memory.size,memory.limit,make.socket,makeRweaveLatexCodeRunner,make.packages.html,%
-ls.str,lsf.str,localeToCharset,loadhistory,limitedLabels,%
-is.relistable,install.packages,installed.packages,index.search,history,%
-help.start,help.search,help.request,head.matrix,head,%
-glob2rx,getTxtProgressBar,getS3method,getFromNamespace,getCRANmirrors,%
-getAnywhere,formatUL,formatOL,flush.console,fixInNamespace,%
-findLineNum,file_test,file.edit,dump.frames,download.packages,%
-download.file,de.setup,de.restore,de.ncols,data.entry,%
-CRAN.packages,count.fields,contrib.url,compareVersion,combn,%
-close.socket,citHeader,citFooter,citEntry,citation,%
-chooseCRANmirror,checkCRAN,capture.output,bug.report,browseVignettes,%
-browseURL,browseEnv,available.packages,assignInNamespace,as.roman,%
-as.relistable,as.personList,as.person,aspell,argsAnywhere,%
-alarm%
+write.csv,vignette,url.show,upgrade,update.packages,%
+update.packageStatus,unzip,untar,unstack,type.convert,%
+txtProgressBar,toLatex,toBibtex,timestamp,tar,%
+tail.matrix,tail,summaryRprof,strOptions,str,%
+stack,setTxtProgressBar,setRepositories,setBreakpoint,sessionInfo,%
+select.list,savehistory,rtags,removeSource,remove.packages,%
+relist,recover,readCitationFile,read.table,read.socket,%
+read.fwf,read.fortran,read.delim2,read.delim,read.csv2,%
+read.csv,read.DIF,rc.status,rc.settings,rc.options,%
+rc.getOption,promptPackage,promptData,personList,person,%
+packageVersion,packageStatus,packageDescription,package.skeleton,package.contents,%
+old.packages,object.size,nsl,news,new.packages,%
+modifyList,mirror2html,memory.size,memory.limit,makeRweaveLatexCodeRunner,%
+make.socket,make.packages.html,maintainer,lsf.str,ls.str,%
+localeToCharset,loadhistory,limitedLabels,is.relistable,installed.packages,%
+install.packages,history,help.start,help.search,help.request,%
+head.matrix,head,globalVariables,glob2rx,getTxtProgressBar,%
+getSrcref,getSrcLocation,getSrcFilename,getSrcDirectory,getS3method,%
+getFromNamespace,getCRANmirrors,getAnywhere,formatUL,formatOL,%
+flush.console,fixInNamespace,findLineNum,file_test,file.edit,%
+dump.frames,download.packages,download.file,de.setup,de.restore,%
+de.ncols,data.entry,create.post,count.fields,contrib.url,%
+compareVersion,combn,close.socket,citation,citHeader,%
+citFooter,citEntry,chooseCRANmirror,chooseBioCmirror,checkCRAN,%
+capture.output,bug.report,browseVignettes,browseURL,browseEnv,%
+bibentry,available.packages,assignInNamespace,assignInMyNamespace,aspell_write_personal_dictionary_file,%
+aspell_package_vignettes,aspell_package_Rd_files,aspell,as.roman,as.relistable,%
+as.personList,as.person,argsAnywhere,aregexec,alarm,%
+adist,View,URLencode,URLdecode,SweaveSyntaxNoweb,%
+SweaveSyntaxLatex,SweaveSyntConv,SweaveHooks,Sweave,Stangle,%
+RweaveTryStop,RweaveLatexWritedoc,RweaveLatexSetup,RweaveLatexOptions,RweaveLatexFinish,%
+RweaveLatex,RweaveEvalWithOpt,RweaveChunkPrefix,RtangleWritedoc,RtangleSetup,%
+Rtangle,Rprofmem,Rprof,RSiteSearch,RShowDoc,%
+CRAN.packages%
},%
keywordstyle={[7]{\bf\color{RRecomdcolor}}},%
%
% --------------------------
% Registration of package datasets [recommended or base]
% --------------------------
-morekeywords={[8]WWWusage,WorldPhones,women,warpbreaks,volcano,%
-VADeaths,uspop,USPersonalExpenditure,USJudgeRatings,USArrests,%
-USAccDeaths,UKgas,UKDriverDeaths,UCBAdmissions,trees,%
-treering,ToothGrowth,Titanic,Theoph,swiss,%
-sunspot.year,sunspots,sunspot.month,state.x77,state.region,%
-state.name,state.division,state.center,state.area,state.abb,%
-stack.x,stackloss,stack.loss,sleep,Seatbelts,%
-rock,rivers,randu,quakes,Puromycin,%
-pressure,presidents,precip,PlantGrowth,OrchardSprays,%
-Orange,occupationalStatus,nottem,Nile,nhtemp,%
-mtcars,morley,mdeaths,lynx,longley,%
-Loblolly,LifeCycleSavings,lh,ldeaths,LakeHuron,%
-JohnsonJohnson,islands,iris3,iris,InsectSprays,%
-infert,Indometh,Harman74.cor,Harman23.cor,HairEyeColor,%
-freeny.y,freeny.x,freeny,Formaldehyde,fdeaths,%
-faithful,EuStockMarkets,eurodist,euro.cross,euro,%
-esoph,DNase,discoveries,crimtab,CO2,%
-co2,chickwts,ChickWeight,cars,BOD,%
-BJsales.lead,BJsales,beaver2,beaver1,austres,%
-attitude,attenu,anscombe,airquality,AirPassengers,%
-airmiles,ability.cov%
+morekeywords={[8]women,warpbreaks,volcano,uspop,trees,%
+treering,swiss,sunspots,sunspot.year,sunspot.month,%
+state.x77,state.region,state.name,state.division,state.center,%
+state.area,state.abb,stackloss,stack.x,stack.loss,%
+sleep,rock,rivers,randu,quakes,%
+pressure,presidents,precip,occupationalStatus,nottem,%
+nhtemp,mtcars,morley,mdeaths,lynx,%
+longley,lh,ldeaths,islands,iris3,%
+iris,infert,freeny.y,freeny.x,freeny,%
+fdeaths,faithful,eurodist,euro.cross,euro,%
+esoph,discoveries,crimtab,co2,chickwts,%
+cars,beaver2,beaver1,austres,attitude,%
+attenu,anscombe,airquality,airmiles,ability.cov,%
+WorldPhones,WWWusage,VADeaths,USPersonalExpenditure,USJudgeRatings,%
+USArrests,USAccDeaths,UKgas,UKDriverDeaths,UCBAdmissions,%
+ToothGrowth,Titanic,Theoph,Seatbelts,Puromycin,%
+PlantGrowth,OrchardSprays,Orange,Nile,Loblolly,%
+LifeCycleSavings,LakeHuron,JohnsonJohnson,InsectSprays,Indometh,%
+Harman74.cor,Harman23.cor,HairEyeColor,Formaldehyde,EuStockMarkets,%
+DNase,ChickWeight,CO2,BOD,BJsales.lead,%
+BJsales,AirPassengers%
},%
keywordstyle={[8]{\bf\color{RRecomdcolor}}},%
%
@@ -687,205 +633,215 @@
% --------------------------
morekeywords={[9]validSlotNames,validObject,unRematchDefinition,trySilent,tryNew,%
traceOn,traceOff,testVirtual,testInheritedMethods,superClassDepth,%
-Summary,substituteFunctionArgs,substituteDirect,slotsFromS3,slotNames,%
-slot<-,slot,sigToEnv,SignatureMethod,signature,%
-showMlist,showMethods,showExtends,showDefault,showClass,%
-setValidity,setReplaceMethod,setPrimitiveMethods,setPackageName,setOldClass,%
-setMethod,setIs,setGroupGeneric,setGenericImplicit,setGeneric,%
-setDataPart,setClassUnion,setClass,setAs,sessionData,%
-selectSuperClasses,selectMethod,seemsS4Object,sealClass,S3Part<-,%
-S3Part,S3Class<-,S3Class,resetGeneric,resetClass,%
-requireMethods,representation,removeMethodsObject,removeMethods,removeMethod,%
-removeGeneric,removeClass,rematchDefinition,registerImplicitGenerics,reconcilePropertiesAndPrototype,%
-rbind2,Quote,prototype,promptMethods,promptClass,%
-prohibitGeneric,possibleExtends,packageSlot<-,packageSlot,newEmptyObject,%
-newClassRepresentation,newBasic,mlistMetaName,missingArg,methodsPackageMetaName,%
-MethodsListSelect,MethodsList,method.skeleton,methodSignatureMatrix,MethodAddCoerce,%
-metaNameUndo,mergeMethods,Math2,matchSignature,makeStandardGeneric,%
-makePrototypeFromClassDef,makeMethodsList,makeGeneric,makeExtends,makeClassRepresentation,%
-Logic,loadMethod,listFromMlist,listFromMethods,linearizeMlist,%
-languageEl<-,languageEl,isXS3Class,isVirtualClass,isSealedMethod,%
-isSealedClass,isGroup,isGrammarSymbol,isGeneric,isClassUnion,%
-isClassDef,isClass,insertMethod,initialize,inheritedSlotNames,%
-implicitGeneric,hasMethods,hasMethod,hasArg,getVirtual,%
-getValidity,getSubclasses,getSlots,getPrototype,getProperties,%
-getPackageName,getMethodsMetaData,getMethodsForDispatch,getMethods,getMethod,%
-getGroupMembers,getGroup,getGenerics,getGeneric,getFunction,%
-getExtends,getDataPart,getClassPackage,getClassName,getClasses,%
-getClassDef,getClass,getAllSuperClasses,getAllMethods,getAccess,%
-generic.skeleton,functionBody<-,functionBody,formalArgs,fixPre1.8,%
-findUnique,findMethodSignatures,findMethods,findMethod,findFunction,%
-findClass,finalDefaultMethod,extends,existsMethod,existsFunction,%
-emptyMethodsList,empty.dump,elNamed<-,elNamed,el<-,%
-el,dumpMethods,dumpMethod,doPrimitiveMethod,defaultPrototype,%
-defaultDumpName,conformMethod,Complex,completeSubclasses,completeExtends,%
-completeClassDefinition,Compare,coerce<-,coerce,classMetaName,%
-classesToAM,checkSlotAssignment,cbind2,canCoerce,callNextMethod,%
-callGeneric,cacheMethod,cacheMetaData,cacheGenericsMetaData,body<-,%
-balanceMethodsList,assignMethodsMetaData,assignClassDef,asMethodDefinition,as<-,%
-Arith,allNames,allGenerics,addNextMethod%
+substituteFunctionArgs,substituteDirect,slotsFromS3,slotNames,slot<-,%
+slot,signature,sigToEnv,showMlist,showMethods,%
+showExtends,showDefault,showClass,setValidity,setReplaceMethod,%
+setRefClass,setPrimitiveMethods,setPackageName,setOldClass,setMethod,%
+setLoadActions,setLoadAction,setIs,setGroupGeneric,setGenericImplicit,%
+setGeneric,setDataPart,setClassUnion,setClass,setAs,%
+sessionData,selectSuperClasses,selectMethod,seemsS4Object,sealClass,%
+resetGeneric,resetClass,requireMethods,representation,removeMethodsObject,%
+removeMethods,removeMethod,removeGeneric,removeClass,rematchDefinition,%
+registerImplicitGenerics,reconcilePropertiesAndPrototype,rbind2,prototype,promptMethods,%
+promptClass,prohibitGeneric,possibleExtends,packageSlot<-,packageSlot,%
+newEmptyObject,newClassRepresentation,newBasic,multipleClasses,mlistMetaName,%
+missingArg,methodsPackageMetaName,methodSignatureMatrix,method.skeleton,metaNameUndo,%
+mergeMethods,matchSignature,makeStandardGeneric,makePrototypeFromClassDef,makeMethodsList,%
+makeGeneric,makeExtends,makeClassRepresentation,loadMethod,listFromMlist,%
+listFromMethods,linearizeMlist,languageEl<-,languageEl,isXS3Class,%
+isVirtualClass,isSealedMethod,isSealedClass,isGroup,isGrammarSymbol,%
+isGeneric,isClassUnion,isClassDef,isClass,insertSource,%
+insertMethod,initialize,initRefFields,initFieldArgs,inheritedSlotNames,%
+implicitGeneric,hasMethods,hasMethod,hasLoadAction,hasArg,%
+getVirtual,getValidity,getSubclasses,getSlots,getRefClass,%
+getPrototype,getProperties,getPackageName,getMethodsMetaData,getMethodsForDispatch,%
+getMethods,getMethod,getLoadActions,getGroupMembers,getGroup,%
+getGenerics,getGeneric,getFunction,getExtends,getDataPart,%
+getClasses,getClassPackage,getClassName,getClassDef,getClass,%
+getAllSuperClasses,getAllMethods,getAccess,generic.skeleton,functionBody<-,%
+functionBody,formalArgs,fixPre1.8,findUnique,findMethods,%
+findMethodSignatures,findMethod,findFunction,findClass,finalDefaultMethod,%
+extends,existsMethod,existsFunction,evalqOnLoad,evalSource,%
+evalOnLoad,emptyMethodsList,empty.dump,elNamed<-,elNamed,%
+el<-,el,dumpMethods,dumpMethod,doPrimitiveMethod,%
+defaultPrototype,defaultDumpName,conformMethod,completeSubclasses,completeExtends,%
+completeClassDefinition,coerce<-,coerce,classesToAM,className,%
+classMetaName,classLabel,checkSlotAssignment,cbind2,canCoerce,%
+callNextMethod,callGeneric,cacheMethod,cacheMetaData,cacheGenericsMetaData,%
+body<-,balanceMethodsList,assignMethodsMetaData,assignClassDef,asMethodDefinition,%
+as<-,allNames,allGenerics,addNextMethod,Summary,%
+SignatureMethod,S3Part<-,S3Part,S3Class<-,S3Class,%
+Quote,MethodsListSelect,MethodsList,MethodAddCoerce,Math2,%
[TRUNCATED]
To get the complete diff run:
svnlook diff /svnroot/distr -r 820
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