[Distr-commits] r819 - branches/distr-2.4/pkg/startupmsg/tests/Examples pkg/SweaveListingUtils/tests/Examples pkg/distr/tests/Examples pkg/distrEx/tests/Examples pkg/startupmsg/tests/Examples
noreply at r-forge.r-project.org
noreply at r-forge.r-project.org
Sun May 27 07:04:37 CEST 2012
Author: stamats
Date: 2012-05-27 07:04:36 +0200 (Sun, 27 May 2012)
New Revision: 819
Modified:
branches/distr-2.4/pkg/startupmsg/tests/Examples/startupmsg-Ex.Rout.save
pkg/SweaveListingUtils/tests/Examples/SweaveListingUtils-Ex.Rout.save
pkg/distr/tests/Examples/distr-Ex.Rout.save
pkg/distrEx/tests/Examples/distrEx-Ex.Rout.save
pkg/startupmsg/tests/Examples/startupmsg-Ex.Rout.save
Log:
started checking the packages, realized that most current versions are under distr-2.4
Modified: branches/distr-2.4/pkg/startupmsg/tests/Examples/startupmsg-Ex.Rout.save
===================================================================
--- branches/distr-2.4/pkg/startupmsg/tests/Examples/startupmsg-Ex.Rout.save 2012-05-22 16:05:51 UTC (rev 818)
+++ branches/distr-2.4/pkg/startupmsg/tests/Examples/startupmsg-Ex.Rout.save 2012-05-27 05:04:36 UTC (rev 819)
@@ -1,7 +1,8 @@
-R version 2.10.0 beta (2009-10-15 r50107)
-Copyright (C) 2009 The R Foundation for Statistical Computing
+R version 2.15.0 Patched (2012-05-26 r59450) -- "Easter Beagle"
+Copyright (C) 2012 The R Foundation for Statistical Computing
ISBN 3-900051-07-0
+Platform: x86_64-unknown-linux-gnu (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
@@ -17,84 +18,19 @@
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
-> ### * <HEADER>
-> ###
-> attach(NULL, name = "CheckExEnv")
-> assign("nameEx",
-+ local({
-+ s <- "__{must remake R-ex/*.R}__"
-+ function(new) {
-+ if(!missing(new)) s <<- new else s
-+ }
-+ }),
-+ pos = "CheckExEnv")
-> ## Add some hooks to label plot pages for base and grid graphics
-> assign("base_plot_hook",
-+ function() {
-+ pp <- par(c("mfg","mfcol","oma","mar"))
-+ if(all(pp$mfg[1:2] == c(1, pp$mfcol[2]))) {
-+ outer <- (oma4 <- pp$oma[4]) > 0; mar4 <- pp$mar[4]
-+ mtext(sprintf("help(\"%s\")", nameEx()), side = 4,
-+ line = if(outer)max(1, oma4 - 1) else min(1, mar4 - 1),
-+ outer = outer, adj = 1, cex = .8, col = "orchid", las=3)
-+ }
-+ },
-+ pos = "CheckExEnv")
-> assign("grid_plot_hook",
-+ function() {
-+ grid::pushViewport(grid::viewport(width=grid::unit(1, "npc") -
-+ grid::unit(1, "lines"), x=0, just="left"))
-+ grid::grid.text(sprintf("help(\"%s\")", nameEx()),
-+ x=grid::unit(1, "npc") + grid::unit(0.5, "lines"),
-+ y=grid::unit(0.8, "npc"), rot=90,
-+ gp=grid::gpar(col="orchid"))
-+ },
-+ pos = "CheckExEnv")
-> setHook("plot.new", get("base_plot_hook", pos = "CheckExEnv"))
-> setHook("persp", get("base_plot_hook", pos = "CheckExEnv"))
-> setHook("grid.newpage", get("grid_plot_hook", pos = "CheckExEnv"))
-> assign("cleanEx",
-+ function(env = .GlobalEnv) {
-+ rm(list = ls(envir = env, all.names = TRUE), envir = env)
-+ RNGkind("default", "default")
-+ set.seed(1)
-+ options(warn = 1)
-+ .CheckExEnv <- as.environment("CheckExEnv")
-+ delayedAssign("T", stop("T used instead of TRUE"),
-+ assign.env = .CheckExEnv)
-+ delayedAssign("F", stop("F used instead of FALSE"),
-+ assign.env = .CheckExEnv)
-+ sch <- search()
-+ newitems <- sch[! sch %in% .oldSearch]
-+ for(item in rev(newitems))
-+ eval(substitute(detach(item), list(item=item)))
-+ missitems <- .oldSearch[! .oldSearch %in% sch]
-+ if(length(missitems))
-+ warning("items ", paste(missitems, collapse=", "),
-+ " have been removed from the search path")
-+ },
-+ pos = "CheckExEnv")
-> assign("ptime", proc.time(), pos = "CheckExEnv")
-> ## at least one package changes these via ps.options(), so do this
-> ## before loading the package.
-> ## Use postscript as incomplete files may be viewable, unlike PDF.
-> ## Choose a size that is close to on-screen devices, fix paper
-> grDevices::ps.options(width = 7, height = 7, paper = "a4", reset = TRUE)
-> grDevices::postscript("startupmsg-Ex.ps")
->
-> assign("par.postscript", graphics::par(no.readonly = TRUE), pos = "CheckExEnv")
-> options(contrasts = c(unordered = "contr.treatment", ordered = "contr.poly"))
+> pkgname <- "startupmsg"
+> source(file.path(R.home("share"), "R", "examples-header.R"))
> options(warn = 1)
> library('startupmsg')
-:startupmsg> Utilities for start-up messages (version 0.7)
+:startupmsg> Utilities for start-up messages (version 0.8)
:startupmsg>
:startupmsg> For more information see ?"startupmsg",
:startupmsg> NEWS("startupmsg")
>
> assign(".oldSearch", search(), pos = 'CheckExEnv')
-> assign(".oldNS", loadedNamespaces(), pos = 'CheckExEnv')
-> cleanEx(); nameEx("StartupUtilities")
+> cleanEx()
+> nameEx("StartupUtilities")
> ### * StartupUtilities
>
> flush(stderr()); flush(stdout())
@@ -159,7 +95,7 @@
> ### reading information file utilities
> readVersionInformation("stats")
$ver
-[1] "2.10.0"
+[1] "2.15.0"
$title
[1] "The R Stats Package"
@@ -170,13 +106,14 @@
> pointertoNEWS("stats") ## no NEWS file;
NULL
> NEWS("stats") ## no NEWS file;
-Cannot open file '/home/btms02/RTOP/Rbranch/library/stats/NEWS': No such file or directory
+Cannot open file '/home/kohlm/RTOP/Rbranch/library/stats/NEWS': No such file or directory
> ## for packages with NEWS file see e.g. randomForest, distr
>
>
>
-> cleanEx(); nameEx("myStartupUtilities")
+> cleanEx()
+> nameEx("myStartupUtilities")
> ### * myStartupUtilities
>
> flush(stderr()); flush(stdout())
@@ -194,7 +131,7 @@
>
> ## issuing of messages controlled by options()
> buildStartupMessage(pkg="stats", msg)
-:stats> The R Stats Package (version 2.10.0)
+:stats> The R Stats Package (version 2.15.0)
:stats>
:stats> Note that you may set global options by options() --- cf.
:stats> ?"options".
@@ -203,13 +140,13 @@
> suppressMessages(buildStartupMessage(pkg="stats", msg))
> onlytypeStartupMessages(buildStartupMessage(pkg="stats", msg),
+ atypes="version")
-The R Stats Package (version 2.10.0)
+The R Stats Package (version 2.15.0)
>
> getOption("StartupBanner")
NULL
> buildStartupMessage(pkg="stats", msg)
-:stats> The R Stats Package (version 2.10.0)
+:stats> The R Stats Package (version 2.15.0)
:stats>
:stats> Note that you may set global options by options() --- cf.
:stats> ?"options".
@@ -222,7 +159,7 @@
> options("StartupBanner"="complete");getOption("StartupBanner")
[1] "complete"
> buildStartupMessage(pkg="stats", msg)
-:stats> The R Stats Package (version 2.10.0)
+:stats> The R Stats Package (version 2.15.0)
:stats>
:stats> Note that you may set global options by options() --- cf.
:stats> ?"options".
@@ -231,13 +168,13 @@
> options("StartupBanner"="something else");getOption("StartupBanner")
[1] "something else"
> buildStartupMessage(pkg="stats", msg)
-:stats> The R Stats Package (version 2.10.0)
+:stats> The R Stats Package (version 2.15.0)
:stats>
>
> options("StartupBanner"=NULL);getOption("StartupBanner")
NULL
> buildStartupMessage(pkg="stats", msg)
-:stats> The R Stats Package (version 2.10.0)
+:stats> The R Stats Package (version 2.15.0)
:stats>
:stats> Note that you may set global options by options() --- cf.
:stats> ?"options".
@@ -246,7 +183,7 @@
>
> MNH <- "http://www.r-project.org/"
> buildStartupMessage(pkg="stats", msg, packageHelp=TRUE, MANUAL=MNH)
-:stats> The R Stats Package (version 2.10.0)
+:stats> The R Stats Package (version 2.15.0)
:stats>
:stats> Note that you may set global options by options() --- cf.
:stats> ?"options".
@@ -258,7 +195,7 @@
> ## "demo/nlm.R" as a "manual": to be system-independent the
> ## first call is to be preferred
> buildStartupMessage(pkg="stats", msg, packageHelp=TRUE, MANUAL=c("demo","nlm.R"))
-:stats> The R Stats Package (version 2.10.0)
+:stats> The R Stats Package (version 2.15.0)
:stats>
:stats> Note that you may set global options by options() --- cf.
:stats> ?"options".
@@ -267,7 +204,7 @@
> ### works, too, (i.e. is equivalent) under Linux and Windows (at least):
> buildStartupMessage(pkg="stats", msg, packageHelp=TRUE, MANUAL="demo/nlm.R")
-:stats> The R Stats Package (version 2.10.0)
+:stats> The R Stats Package (version 2.15.0)
:stats>
:stats> Note that you may set global options by options() --- cf.
:stats> ?"options".
@@ -281,7 +218,7 @@
> ### * <FOOTER>
> ###
> cat("Time elapsed: ", proc.time() - get("ptime", pos = 'CheckExEnv'),"\n")
-Time elapsed: 0.108 0.008 0.123 0.004 0.004
+Time elapsed: 0.116 0.008 0.126 0 0
> grDevices::dev.off()
null device
1
Modified: pkg/SweaveListingUtils/tests/Examples/SweaveListingUtils-Ex.Rout.save
===================================================================
--- pkg/SweaveListingUtils/tests/Examples/SweaveListingUtils-Ex.Rout.save 2012-05-22 16:05:51 UTC (rev 818)
+++ pkg/SweaveListingUtils/tests/Examples/SweaveListingUtils-Ex.Rout.save 2012-05-27 05:04:36 UTC (rev 819)
@@ -1,5 +1,5 @@
-R version 2.14.1 Patched (2012-02-02 r58256)
+R version 2.15.0 Patched (2012-05-26 r59450) -- "Easter Beagle"
Copyright (C) 2012 The R Foundation for Statistical Computing
ISBN 3-900051-07-0
Platform: x86_64-unknown-linux-gnu (64-bit)
@@ -464,59 +464,60 @@
se.contrast,screeplot,scatter.smooth,runmed,rstudent.lm,%
rstudent.glm,rstandard.lm,rstandard.glm,rmultinom,residuals.lm,%
residuals.glm,residuals.default,reshapeWide,reshapeLong,reshape,%
-reorder,rect.hclust,read.ftable,r2dtable,quasipoisson,%
-quasibinomial,quantile.default,quade.test,qqnorm.default,qbirthday,%
-prop.trend.test,prop.test,promax,printCoefmat,print.ts,%
-print.terms,print.logLik,print.lm,print.integrate,print.infl,%
-print.glm,print.ftable,print.formula,print.family,print.density,%
-print.coefmat,print.anova,princomp,predict.poly,predict.mlm,%
-predict.lm,predict.glm,prcomp,ppr,power.t.test,%
-power.prop.test,power.anova.test,polym,poisson.test,plot.ts,%
-plot.stepfun,plot.spec.phase,plot.spec.coherency,plot.spec,plot.mlm,%
-plot.lm,plot.ecdf,plot.density,plot.TukeyHSD,plclust,%
-pbirthday,pairwise.wilcox.test,pairwise.table,pairwise.t.test,pairwise.prop.test,%
-pacf,p.adjust.methods,p.adjust,order.dendrogram,oneway.test,%
-numericDeriv,nobs,nls.control,nls,nlminb,%
-naresid,naprint,napredict,na.pass,na.omit,%
-na.fail,na.exclude,na.contiguous,na.action,mood.test,%
-monthplot,model.weights,model.tables,model.response,model.offset,%
-model.matrix.lm,model.matrix.default,model.matrix,model.frame.lm,model.frame.glm,%
-model.frame.default,model.frame.aovlist,model.frame,model.extract,medpolish,%
-median.default,mcnemar.test,mauchly.test,mauchley.test,mantelhaen.test,%
-manova,makepredictcall,makeARIMA,make.link,ls.print,%
-ls.diag,logLik,loess.smooth,loess.control,loess,%
-loadings,lm.wfit.null,lm.wfit,lm.influence,lm.fit.null,%
-lm.fit,lines.ts,line,lag.plot,lag,%
-ksmooth,ks.test,kruskal.test,knots,kmeans,%
-kernel,kernapply,isoreg,is.tskernel,is.ts,%
-is.stepfun,is.mts,is.leaf,is.empty.model,inverse.gaussian,%
-interaction.plot,integrate,influence.measures,heatmap,hclust,%
-hatvalues.lm,hatvalues,glm.fit.null,glm.fit,glm.control,%
-get_all_vars,getInitial,getCall,friedman.test,fligner.test,%
-fitted.values,fisher.test,filter,factor.scope,factanal,%
-expand.model.frame,estVar,embed,eff.aovlist,ecdf,%
-dummy.coef,drop.terms,drop.scope,dmultinom,dist,%
-diffinv,diff.ts,dfbeta,df.residual,df.kernel,%
-deriv3.formula,deriv3.default,deriv3,deriv.formula,deriv.default,%
-density.default,dendrapply,delete.response,decompose,cutree,%
-cpgram,cov2cor,cov.wt,cor.test,cophenetic,%
-cooks.distance,contrasts<-,contr.treatment,contr.sum,contr.poly,%
-contr.helmert,contr.SAS,constrOptim,confint.default,confint,%
-complete.cases,cmdscale,clearNames,chisq.test,ccf,%
-case.names,cancor,bw.ucv,bw.nrd0,bw.nrd,%
-bw.bcv,bw.SJ,biplot,binom.test,bartlett.test,%
-bandwidth.kernel,asOneSidedFormula,as.ts,as.stepfun,as.hclust,%
-as.formula,as.dist,as.dendrogram,arima0.diag,arima0,%
-arima.sim,arima,ar.yw,ar.ols,ar.mle,%
-ar.burg,ar,ansari.test,anovalist.lm,anova.mlm,%
-anova.lmlist,anova.lm,anova.glmlist,anova.glm,aggregate.ts,%
-aggregate.default,aggregate.data.frame,addmargins,add.scope,acf2AR,%
-acf,TukeyHSD.aov,TukeyHSD,StructTS,SSweibull,%
-SSmicmen,SSlogis,SSgompertz,SSfpl,SSfol,%
-SSbiexp,SSasympOrig,SSasympOff,SSasymp,SSD,%
-PP.test,NLSstRtAsymptote,NLSstLfAsymptote,NLSstClosestX,NLSstAsymptotic,%
-KalmanSmooth,KalmanRun,KalmanLike,KalmanForecast,HoltWinters,%
-Box.test,BIC,ARMAtoMA,ARMAacf,AIC%
+reorder,rect.hclust,read.ftable,rWishart,r2dtable,%
+quasipoisson,quasibinomial,quantile.default,quade.test,qqnorm.default,%
+qbirthday,prop.trend.test,prop.test,promax,printCoefmat,%
+print.ts,print.terms,print.logLik,print.lm,print.integrate,%
+print.infl,print.glm,print.ftable,print.formula,print.family,%
+print.density,print.coefmat,print.anova,princomp,predict.poly,%
+predict.mlm,predict.lm,predict.glm,prcomp,ppr,%
+power.t.test,power.prop.test,power.anova.test,polym,poisson.test,%
+plot.ts,plot.stepfun,plot.spec.phase,plot.spec.coherency,plot.spec,%
+plot.mlm,plot.lm,plot.ecdf,plot.density,plot.TukeyHSD,%
+plclust,pbirthday,pairwise.wilcox.test,pairwise.table,pairwise.t.test,%
+pairwise.prop.test,pacf,p.adjust.methods,p.adjust,order.dendrogram,%
+optimHess,oneway.test,numericDeriv,nobs,nls.control,%
+nls,nlminb,naresid,naprint,napredict,%
+na.pass,na.omit,na.fail,na.exclude,na.contiguous,%
+na.action,mood.test,monthplot,model.weights,model.tables,%
+model.response,model.offset,model.matrix.lm,model.matrix.default,model.matrix,%
+model.frame.lm,model.frame.glm,model.frame.default,model.frame.aovlist,model.frame,%
+model.extract,medpolish,median.default,mcnemar.test,mauchly.test,%
+mauchley.test,mantelhaen.test,manova,makepredictcall,makeARIMA,%
+make.link,ls.print,ls.diag,logLik,loess.smooth,%
+loess.control,loess,loadings,lm.wfit.null,lm.wfit,%
+lm.influence,lm.fit.null,lm.fit,lines.ts,line,%
+lag.plot,lag,ksmooth,ks.test,kruskal.test,%
+knots,kmeans,kernel,kernapply,isoreg,%
+is.tskernel,is.ts,is.stepfun,is.mts,is.leaf,%
+is.empty.model,inverse.gaussian,interaction.plot,integrate,influence.measures,%
+heatmap,hclust,hatvalues.lm,hatvalues,glm.fit.null,%
+glm.fit,glm.control,get_all_vars,getInitial,getCall,%
+friedman.test,fligner.test,fitted.values,fisher.test,filter,%
+factor.scope,factanal,expand.model.frame,estVar,embed,%
+eff.aovlist,ecdf,dummy.coef,drop.terms,drop.scope,%
+dmultinom,dist,diffinv,diff.ts,dfbeta,%
+df.residual,df.kernel,deriv3.formula,deriv3.default,deriv3,%
+deriv.formula,deriv.default,density.default,dendrapply,delete.response,%
+decompose,cutree,cpgram,cov2cor,cov.wt,%
+cor.test,cophenetic,cooks.distance,contrasts<-,contr.treatment,%
+contr.sum,contr.poly,contr.helmert,contr.SAS,constrOptim,%
+confint.default,confint,complete.cases,cmdscale,clearNames,%
+chisq.test,ccf,case.names,cancor,bw.ucv,%
+bw.nrd0,bw.nrd,bw.bcv,bw.SJ,biplot,%
+binom.test,bartlett.test,bandwidth.kernel,asOneSidedFormula,as.ts,%
+as.stepfun,as.hclust,as.formula,as.dist,as.dendrogram,%
+arima0.diag,arima0,arima.sim,arima,ar.yw,%
+ar.ols,ar.mle,ar.burg,ar,ansari.test,%
+anovalist.lm,anova.mlm,anova.lmlist,anova.lm,anova.glmlist,%
+anova.glm,aggregate.ts,aggregate.default,aggregate.data.frame,addmargins,%
+add.scope,acf2AR,acf,TukeyHSD.aov,TukeyHSD,%
+StructTS,SSweibull,SSmicmen,SSlogis,SSgompertz,%
+SSfpl,SSfol,SSbiexp,SSasympOrig,SSasympOff,%
+SSasymp,SSD,PP.test,NLSstRtAsymptote,NLSstLfAsymptote,%
+NLSstClosestX,NLSstAsymptotic,KalmanSmooth,KalmanRun,KalmanLike,%
+KalmanForecast,HoltWinters,Box.test,BIC,ARMAtoMA,%
+ARMAacf,AIC%
},%
keywordstyle={[4]{\bf\color{RRecomdcolor}}},%
%
@@ -580,23 +581,24 @@
make.socket,make.packages.html,maintainer,lsf.str,ls.str,%
localeToCharset,loadhistory,limitedLabels,is.relistable,installed.packages,%
install.packages,history,help.start,help.search,help.request,%
-head.matrix,head,glob2rx,getTxtProgressBar,getSrcref,%
-getSrcLocation,getSrcFilename,getSrcDirectory,getS3method,getFromNamespace,%
-getCRANmirrors,getAnywhere,formatUL,formatOL,flush.console,%
-fixInNamespace,findLineNum,file_test,file.edit,dump.frames,%
-download.packages,download.file,de.setup,de.restore,de.ncols,%
-data.entry,create.post,count.fields,contrib.url,compareVersion,%
-combn,close.socket,citation,citHeader,citFooter,%
-citEntry,chooseCRANmirror,chooseBioCmirror,checkCRAN,capture.output,%
-bug.report,browseVignettes,browseURL,browseEnv,bibentry,%
-available.packages,assignInNamespace,aspell_write_personal_dictionary_file,aspell_package_vignettes,aspell_package_Rd_files,%
-aspell,as.roman,as.relistable,as.personList,as.person,%
-argsAnywhere,aregexec,alarm,adist,View,%
-URLencode,URLdecode,SweaveSyntaxNoweb,SweaveSyntaxLatex,SweaveSyntConv,%
-SweaveHooks,Sweave,Stangle,RweaveTryStop,RweaveLatexWritedoc,%
-RweaveLatexSetup,RweaveLatexOptions,RweaveLatexFinish,RweaveLatex,RweaveEvalWithOpt,%
-RweaveChunkPrefix,RtangleWritedoc,RtangleSetup,Rtangle,Rprofmem,%
-Rprof,RSiteSearch,RShowDoc,CRAN.packages%
+head.matrix,head,globalVariables,glob2rx,getTxtProgressBar,%
+getSrcref,getSrcLocation,getSrcFilename,getSrcDirectory,getS3method,%
+getFromNamespace,getCRANmirrors,getAnywhere,formatUL,formatOL,%
+flush.console,fixInNamespace,findLineNum,file_test,file.edit,%
+dump.frames,download.packages,download.file,de.setup,de.restore,%
+de.ncols,data.entry,create.post,count.fields,contrib.url,%
+compareVersion,combn,close.socket,citation,citHeader,%
+citFooter,citEntry,chooseCRANmirror,chooseBioCmirror,checkCRAN,%
+capture.output,bug.report,browseVignettes,browseURL,browseEnv,%
+bibentry,available.packages,assignInNamespace,assignInMyNamespace,aspell_write_personal_dictionary_file,%
+aspell_package_vignettes,aspell_package_Rd_files,aspell,as.roman,as.relistable,%
+as.personList,as.person,argsAnywhere,aregexec,alarm,%
+adist,View,URLencode,URLdecode,SweaveSyntaxNoweb,%
+SweaveSyntaxLatex,SweaveSyntConv,SweaveHooks,Sweave,Stangle,%
+RweaveTryStop,RweaveLatexWritedoc,RweaveLatexSetup,RweaveLatexOptions,RweaveLatexFinish,%
+RweaveLatex,RweaveEvalWithOpt,RweaveChunkPrefix,RtangleWritedoc,RtangleSetup,%
+Rtangle,Rprofmem,Rprof,RSiteSearch,RShowDoc,%
+CRAN.packages%
},%
keywordstyle={[7]{\bf\color{RRecomdcolor}}},%
%
@@ -636,41 +638,42 @@
slot,signature,sigToEnv,showMlist,showMethods,%
showExtends,showDefault,showClass,setValidity,setReplaceMethod,%
setRefClass,setPrimitiveMethods,setPackageName,setOldClass,setMethod,%
-setIs,setGroupGeneric,setGenericImplicit,setGeneric,setDataPart,%
-setClassUnion,setClass,setAs,sessionData,selectSuperClasses,%
-selectMethod,seemsS4Object,sealClass,resetGeneric,resetClass,%
-requireMethods,representation,removeMethodsObject,removeMethods,removeMethod,%
-removeGeneric,removeClass,rematchDefinition,registerImplicitGenerics,reconcilePropertiesAndPrototype,%
-rbind2,prototype,promptMethods,promptClass,prohibitGeneric,%
-possibleExtends,packageSlot<-,packageSlot,newEmptyObject,newClassRepresentation,%
-newBasic,multipleClasses,mlistMetaName,missingArg,methodsPackageMetaName,%
-methodSignatureMatrix,method.skeleton,metaNameUndo,mergeMethods,matchSignature,%
-makeStandardGeneric,makePrototypeFromClassDef,makeMethodsList,makeGeneric,makeExtends,%
-makeClassRepresentation,loadMethod,listFromMlist,listFromMethods,linearizeMlist,%
-languageEl<-,languageEl,isXS3Class,isVirtualClass,isSealedMethod,%
-isSealedClass,isGroup,isGrammarSymbol,isGeneric,isClassUnion,%
-isClassDef,isClass,insertSource,insertMethod,initialize,%
-initRefFields,initFieldArgs,inheritedSlotNames,implicitGeneric,hasMethods,%
-hasMethod,hasArg,getVirtual,getValidity,getSubclasses,%
-getSlots,getRefClass,getPrototype,getProperties,getPackageName,%
-getMethodsMetaData,getMethodsForDispatch,getMethods,getMethod,getGroupMembers,%
-getGroup,getGenerics,getGeneric,getFunction,getExtends,%
-getDataPart,getClasses,getClassPackage,getClassName,getClassDef,%
-getClass,getAllSuperClasses,getAllMethods,getAccess,generic.skeleton,%
-functionBody<-,functionBody,formalArgs,fixPre1.8,findUnique,%
-findMethods,findMethodSignatures,findMethod,findFunction,findClass,%
-finalDefaultMethod,extends,existsMethod,existsFunction,evalSource,%
-emptyMethodsList,empty.dump,elNamed<-,elNamed,el<-,%
-el,dumpMethods,dumpMethod,doPrimitiveMethod,defaultPrototype,%
-defaultDumpName,conformMethod,completeSubclasses,completeExtends,completeClassDefinition,%
-coerce<-,coerce,classesToAM,className,classMetaName,%
-classLabel,checkSlotAssignment,cbind2,canCoerce,callNextMethod,%
-callGeneric,cacheMethod,cacheMetaData,cacheGenericsMetaData,body<-,%
-balanceMethodsList,assignMethodsMetaData,assignClassDef,asMethodDefinition,as<-,%
-allNames,allGenerics,addNextMethod,Summary,SignatureMethod,%
-S3Part<-,S3Part,S3Class<-,S3Class,Quote,%
-MethodsListSelect,MethodsList,MethodAddCoerce,Math2,Logic,%
-Complex,Compare,Arith%
+setLoadActions,setLoadAction,setIs,setGroupGeneric,setGenericImplicit,%
+setGeneric,setDataPart,setClassUnion,setClass,setAs,%
+sessionData,selectSuperClasses,selectMethod,seemsS4Object,sealClass,%
+resetGeneric,resetClass,requireMethods,representation,removeMethodsObject,%
+removeMethods,removeMethod,removeGeneric,removeClass,rematchDefinition,%
+registerImplicitGenerics,reconcilePropertiesAndPrototype,rbind2,prototype,promptMethods,%
+promptClass,prohibitGeneric,possibleExtends,packageSlot<-,packageSlot,%
+newEmptyObject,newClassRepresentation,newBasic,multipleClasses,mlistMetaName,%
+missingArg,methodsPackageMetaName,methodSignatureMatrix,method.skeleton,metaNameUndo,%
+mergeMethods,matchSignature,makeStandardGeneric,makePrototypeFromClassDef,makeMethodsList,%
+makeGeneric,makeExtends,makeClassRepresentation,loadMethod,listFromMlist,%
+listFromMethods,linearizeMlist,languageEl<-,languageEl,isXS3Class,%
+isVirtualClass,isSealedMethod,isSealedClass,isGroup,isGrammarSymbol,%
+isGeneric,isClassUnion,isClassDef,isClass,insertSource,%
+insertMethod,initialize,initRefFields,initFieldArgs,inheritedSlotNames,%
+implicitGeneric,hasMethods,hasMethod,hasLoadAction,hasArg,%
+getVirtual,getValidity,getSubclasses,getSlots,getRefClass,%
+getPrototype,getProperties,getPackageName,getMethodsMetaData,getMethodsForDispatch,%
+getMethods,getMethod,getLoadActions,getGroupMembers,getGroup,%
+getGenerics,getGeneric,getFunction,getExtends,getDataPart,%
+getClasses,getClassPackage,getClassName,getClassDef,getClass,%
+getAllSuperClasses,getAllMethods,getAccess,generic.skeleton,functionBody<-,%
+functionBody,formalArgs,fixPre1.8,findUnique,findMethods,%
+findMethodSignatures,findMethod,findFunction,findClass,finalDefaultMethod,%
+extends,existsMethod,existsFunction,evalqOnLoad,evalSource,%
+evalOnLoad,emptyMethodsList,empty.dump,elNamed<-,elNamed,%
+el<-,el,dumpMethods,dumpMethod,doPrimitiveMethod,%
+defaultPrototype,defaultDumpName,conformMethod,completeSubclasses,completeExtends,%
+completeClassDefinition,coerce<-,coerce,classesToAM,className,%
+classMetaName,classLabel,checkSlotAssignment,cbind2,canCoerce,%
+callNextMethod,callGeneric,cacheMethod,cacheMetaData,cacheGenericsMetaData,%
+body<-,balanceMethodsList,assignMethodsMetaData,assignClassDef,asMethodDefinition,%
+as<-,allNames,allGenerics,addNextMethod,Summary,%
+SignatureMethod,S3Part<-,S3Part,S3Class<-,S3Class,%
+Quote,MethodsListSelect,MethodsList,MethodAddCoerce,Math2,%
+Logic,Complex,Compare,Arith%
},%
keywordstyle={[9]{\bf\color{RRecomdcolor}}},%
%
@@ -680,38 +683,37 @@
morekeywords={[10]xzfile,xtfrm.numeric_version,xtfrm.factor,xtfrm.difftime,xtfrm.default,%
xtfrm.Surv,xtfrm.POSIXlt,xtfrm.POSIXct,xtfrm.Date,xtfrm.AsIs,%
xtfrm,xpdrows.data.frame,xor.octmode,xor.hexmode,writeLines,%
-writeChar,writeBin,write.table0,write.dcf,within.list,%
-within.data.frame,within,withVisible,withRestarts,withCallingHandlers,%
-with.default,with,which.min,which.max,weekdays.POSIXt,%
-weekdays.Date,weekdays,version,vapply,utf8ToInt,%
-upper.tri,unz,untracemem,unsplit,unserialize,%
-unlockBinding,unloadNamespace,unix.time,units<-.difftime,units<-,%
-units.difftime,units,unique.numeric_version,unique.matrix,unique.default,%
-unique.data.frame,unique.array,unique.POSIXlt,tryCatch,truncate.connection,%
-truncate,trunc.POSIXt,trunc.Date,transform.default,transform.data.frame,%
-tracingState,tracemem,toupper,topenv,tolower,%
-toString.default,toString,textConnectionValue,textConnection,testPlatformEquivalence,%
-tempdir,tcrossprod,taskCallbackManager,t.default,t.data.frame,%
-system2,system.time,system.file,sys.status,sys.source,%
-sys.save.image,sys.parents,sys.parent,sys.on.exit,sys.nframe,%
-sys.load.image,sys.function,sys.frames,sys.frame,sys.calls,%
-sys.call,symbol.For,symbol.C,suppressWarnings,suppressPackageStartupMessages,%
-suppressMessages,summary.table,summary.srcref,summary.srcfile,summary.matrix,%
-summary.factor,summary.default,summary.data.frame,summary.connection,summary.POSIXlt,%
-summary.POSIXct,summary.Date,substring<-,substr<-,subset.matrix,%
-subset.default,subset.data.frame,strwrap,strtrim,strtoi,%
-strptime,strftime,storage.mode<-,storage.mode,stopifnot,%
-stdout,stdin,stderr,standardGeneric,srcref,%
-srcfilecopy,srcfilealias,srcfile,sprintf,split<-.default,%
-split<-.data.frame,split<-,split.default,split.data.frame,split.POSIXct,%
-split.Date,source.url,sort.list,sort.int,sort.default,%
-sort.POSIXlt,solve.qr,solve.default,socketSelect,socketConnection,%
-slice.index,sink.number,simplify2array,simpleWarning,simpleMessage,%
-simpleError,simpleCondition,signalCondition,showConnections,shQuote,%
-setTimeLimit,setSessionTimeLimit,setNamespaceInfo,setHook,setCConverterStatus,%
-set.seed,serialize,seq_len,seq_along,seq.int,%
-seq.default,seq.POSIXt,seq.Date,seek.connection,seek,%
-scan.url,scale.default,saveRDS,save.image,sample.int,%
+writeChar,writeBin,write.dcf,within.list,within.data.frame,%
+within,withVisible,withRestarts,withCallingHandlers,with.default,%
+with,which.min,which.max,weekdays.POSIXt,weekdays.Date,%
+weekdays,version,vapply,utf8ToInt,upper.tri,%
+unz,untracemem,unsplit,unserialize,unlockBinding,%
+unloadNamespace,unix.time,units<-.difftime,units<-,units.difftime,%
+units,unique.numeric_version,unique.matrix,unique.default,unique.data.frame,%
+unique.array,unique.POSIXlt,tryCatch,truncate.connection,truncate,%
+trunc.POSIXt,trunc.Date,transform.default,transform.data.frame,tracingState,%
+tracemem,toupper,topenv,tolower,toString.default,%
+toString,textConnectionValue,textConnection,testPlatformEquivalence,tempdir,%
+tcrossprod,taskCallbackManager,t.default,t.data.frame,system2,%
+system.time,system.file,sys.status,sys.source,sys.save.image,%
+sys.parents,sys.parent,sys.on.exit,sys.nframe,sys.load.image,%
+sys.function,sys.frames,sys.frame,sys.calls,sys.call,%
+suppressWarnings,suppressPackageStartupMessages,suppressMessages,summary.table,summary.srcref,%
+summary.srcfile,summary.matrix,summary.factor,summary.default,summary.data.frame,%
+summary.connection,summary.POSIXlt,summary.POSIXct,summary.Date,substring<-,%
+substr<-,subset.matrix,subset.default,subset.data.frame,strwrap,%
+strtrim,strtoi,strptime,strftime,storage.mode<-,%
+storage.mode,stopifnot,stdout,stdin,stderr,%
+standardGeneric,srcref,srcfilecopy,srcfilealias,srcfile,%
+sprintf,split<-.default,split<-.data.frame,split<-,split.default,%
+split.data.frame,split.POSIXct,split.Date,sort.list,sort.int,%
+sort.default,sort.POSIXlt,solve.qr,solve.default,socketSelect,%
+socketConnection,slice.index,sink.number,simplify2array,simpleWarning,%
+simpleMessage,simpleError,simpleCondition,signalCondition,showConnections,%
+shQuote,setTimeLimit,setSessionTimeLimit,setNamespaceInfo,setHook,%
+setCConverterStatus,set.seed,serialize,seq_len,seq_along,%
+seq.int,seq.default,seq.POSIXt,seq.Date,seek.connection,%
+seek,scale.default,saveRDS,save.image,sample.int,%
sQuote,rowsum.default,rowsum.data.frame,rownames<-,rowSums,%
rowMeans,row.names<-.default,row.names<-.data.frame,row.names<-,row.names.default,%
row.names.data.frame,row.names,round.POSIXt,round.Date,rev.default,%
@@ -719,131 +721,128 @@
rep.numeric_version,rep.int,rep.factor,rep.POSIXlt,rep.POSIXct,%
rep.Date,removeTaskCallback,removeCConverter,regmatches<-,regmatches,%
registerS3methods,registerS3method,regexec,reg.finalizer,readRenviron,%
-readRDS,readLines,readChar,readBin,read.table.url,%
-read.dcf,rcond,rbind.data.frame,rawToChar,rawToBits,%
-rawShift,rawConnectionValue,rawConnection,raw,rapply,%
-range.default,quarters.POSIXt,quarters.Date,quarters,qr.solve,%
-qr.resid,qr.qy,qr.qty,qr.fitted,qr.default,%
-qr.coef,qr.X,qr.R,qr.Q,pushBackLength,%
-pushBack,psigamma,prop.table,proc.time,printNoClass,%
-print.warnings,print.table,print.summaryDefault,print.summary.table,print.srcref,%
-print.srcfile,print.simple.list,print.rle,print.restart,print.proc_time,%
-print.packageInfo,print.octmode,print.numeric_version,print.noquote,print.listof,%
-print.libraryIQR,print.hexmode,print.function,print.factor,print.difftime,%
-print.default,print.data.frame,print.connection,print.condition,print.by,%
-print.POSIXlt,print.POSIXct,print.NativeRoutineList,print.Date,print.DLLRegisteredRoutines,%
-print.DLLInfoList,print.DLLInfo,print.AsIs,prettyNum,pretty.default,%
-pos.to.env,pmin.int,pmax.int,pipe,pi,%
-path.package,path.expand,parseNamespaceFile,parse.dcf,parent.frame,%
-parent.env<-,parent.env,package_version,packageStartupMessage,packageHasNamespace,%
-packageEvent,package.description,packBits,open.srcfilecopy,open.srcfilealias,%
-open.srcfile,open.connection,open,on.exit,oldClass<-,%
-oldClass,nzchar,numeric_version,normalizePath,norm,%
-ngettext,new.env,namespaceImportMethods,namespaceImportFrom,namespaceImportClasses,%
-namespaceImport,namespaceExport,names<-.POSIXlt,names<-,names.POSIXlt,%
-mostattributes<-,months.POSIXt,months.Date,months,month.name,%
-month.abb,mode<-,mget,message,merge.default,%
-merge.data.frame,memory.profile,memDecompress,memCompress,mem.limits,%
-mean.difftime,mean.default,mean.data.frame,mean.POSIXlt,mean.POSIXct,%
-mean.Date,max.col,match.fun,match.call,match.arg,%
-mat.or.vec,margin.table,mapply,manglePackageName,makeActiveBinding,%
-make.unique,make.names,lower.tri,logb,lockEnvironment,%
-lockBinding,loadingNamespaceInfo,loadedNamespaces,loadURL,loadNamespace,%
-list2env,list.files,list.dirs,library.dynam.unload,library.dynam,%
-lfactorial,levels<-.factor,levels<-,levels.default,letters,%
-length<-.factor,length<-,length.POSIXlt,lazyLoadDBfetch,lazyLoadDBexec,%
-lazyLoad,labels.default,l10n_info,kappa.tri,kappa.qr,%
-kappa.lm,kappa.default,julian.POSIXt,julian.Date,julian,%
-isdebugged,isatty,isTRUE,isSymmetric.matrix,isSymmetric,%
-isSeekable,isS4,isRestart,isOpen,isNamespace,%
-isIncomplete,isBaseNamespace,is.vector,is.unsorted,is.table,%
-is.symbol,is.single,is.recursive,is.real,is.raw,%
-is.qr,is.primitive,is.pairlist,is.package_version,is.ordered,%
-is.object,is.numeric_version,is.numeric.difftime,is.numeric.POSIXt,is.numeric.Date,%
-is.numeric,is.null,is.nan,is.name,is.na<-.factor,%
-is.na<-.default,is.na<-,is.na.numeric_version,is.na.data.frame,is.na.POSIXlt,%
-is.na,is.matrix,is.logical,is.loaded,is.list,%
-is.language,is.integer,is.infinite,is.function,is.finite,%
-is.factor,is.expression,is.environment,is.element,is.double,%
-is.data.frame,is.complex,is.character,is.call,is.atomic,%
-is.array,is.R,invokeRestartInteractively,invokeRestart,inverse.rle,%
-intToUtf8,intToBits,importIntoEnv,identity,identical,%
-icuSetCollate,iconvlist,iconv,gzfile,gzcon,%
-grepl,grepRaw,gregexpr,gettextf,gettext,%
-getTaskCallbackNames,getSrcLines,getRversion,getNumCConverters,getNativeSymbolInfo,%
-getNamespaceVersion,getNamespaceUsers,getNamespaceName,getNamespaceInfo,getNamespaceImports,%
-getNamespaceExports,getNamespace,getLoadedDLLs,getHook,getExportedValue,%
-getElement,getDLLRegisteredRoutines.character,getDLLRegisteredRoutines.DLLInfo,getDLLRegisteredRoutines,getConnection,%
-getCallingDLLe,getCallingDLL,getCConverterStatus,getCConverterDescriptions,getAllConnections,%
-gctorture2,gc.time,formatDL,format.pval,format.packageInfo,%
-format.octmode,format.numeric_version,format.libraryIQR,format.info,format.hexmode,%
-format.factor,format.difftime,format.default,format.data.frame,format.char,%
-format.POSIXlt,format.POSIXct,format.Date,format.AsIs,formals<-,%
-force,flush.connection,flush,findRestart,findPackageEnv,%
-findInterval,find.package,file.symlink,file.show,file.rename,%
-file.remove,file.path,file.link,file.info,file.exists,%
-file.create,file.copy,file.choose,file.append,file.access,%
-fifo,factorial,expm1,expand.grid,eval.parent,%
-environmentName,environmentIsLocked,environment<-,env.profile,enquote,%
-encodeString,enc2utf8,enc2native,emptyenv,eapply,%
-dyn.unload,dyn.load,duplicated.numeric_version,duplicated.matrix,duplicated.default,%
-duplicated.data.frame,duplicated.array,duplicated.POSIXlt,droplevels.factor,droplevels.data.frame,%
-droplevels,do.call,dir.create,dimnames<-.data.frame,dimnames<-,%
-dimnames.data.frame,dim<-,dim.data.frame,difftime,diff.default,%
-diff.POSIXt,diff.Date,diag<-,determinant.matrix,determinant,%
-det,delayedAssign,default.stringsAsFactors,debugonce,data.matrix,%
-data.frame,data.class,dQuote,cut.default,cut.POSIXt,%
-cut.Date,contributors,conditionMessage.condition,conditionMessage,conditionCall.condition,%
-conditionCall,computeRestarts,comment<-,colnames<-,colSums,%
-colMeans,codes<-,codes.ordered,codes.factor,closeAllConnections,%
-close.srcfilealias,close.srcfile,close.connection,class<-,chol.default,%
-check_tzones,chartr,charToRaw,char.expand,cbind.data.frame,%
-casefold,capabilities,callCC,c.numeric_version,c.noquote,%
-c.POSIXlt,c.POSIXct,c.Date,bzfile,by.default,%
[TRUNCATED]
To get the complete diff run:
svnlook diff /svnroot/distr -r 819
More information about the Distr-commits
mailing list