[Basta-users] [EXT] Basta-users Digest, Vol 49, Issue 4

Wed Oct 25 18:56:17 CEST 2023

Thanks everyone for the incredibly helpful emails – I really appreciate it! What a welcoming and kind community 😊

From: Basta-users <basta-users-bounces at lists.r-forge.r-project.org> on behalf of basta-users-request at lists.r-forge.r-project.org <basta-users-request at lists.r-forge.r-project.org>
Date: Wednesday, 25 October 2023 at 11:05
To: basta-users at lists.r-forge.r-project.org <basta-users at lists.r-forge.r-project.org>
Subject: [EXT] Basta-users Digest, Vol 49, Issue 4
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Today's Topics:

   1. Re: Basta-users Digest, Vol 49, Issue 3 (Alexandre Courtiol)

----------------------------------------------------------------------

Message: 1
Date: Wed, 25 Oct 2023 11:43:25 +0200
From: Alexandre Courtiol <alexandre.courtiol at gmail.com>
To: basta-users at lists.r-forge.r-project.org
Subject: Re: [Basta-users] Basta-users Digest, Vol 49, Issue 3
Message-ID:
        <CAERMt4dS+dbNxx2i48p=dt+3SgNQQEZSdWs8ASXqaPwNE7r6Xw at mail.gmail.com>
Content-Type: text/plain; charset="utf-8"

To install BaSTA from GitHub, you can do simpler:

remotes::install_github("fercol/BaSTA/pkg")

Done.
Just make sure that you have the package remotes installed on your system.
FYI, remotes is what is called within devtools, but it is a smaller package
so if you don't have devtools installed, you probably want to install that
one instead.

On Wed, 25 Oct 2023 at 11:05, <
basta-users-request at lists.r-forge.r-project.org> wrote:

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> Today's Topics:
>
>    1. Re: R version to use for BaSTA? (Owen R. Jones)
>
>
> ----------------------------------------------------------------------
>
> Message: 1
> Date: Tue, 24 Oct 2023 07:58:27 +0000
> From: "Owen R. Jones" <jones at biology.sdu.dk>
> To: "Brown, Mark" <Mark.Brown at rhul.ac.uk>,
>         "basta-users at lists.r-forge.r-project.org"
>         <basta-users at lists.r-forge.r-project.org>
> Subject: Re: [Basta-users] R version to use for BaSTA?
> Message-ID: <D904A84A-94E9-4CCD-AF46-13C71DEFCB1C at biology.sdu.dk>
> Content-Type: text/plain; charset="utf-8"
>
> Hi Mark,
>
> I built the attached version from source on my machine running R 4.3.1.
> It should work for you. Otherwise, you could build it from source on your
> own computer.
>
> Here?s how to do that?
>
> You should visit the GitHub site for the package:
> https://eur03.safelinks.protection.outlook.com/?url=https%3A%2F%2Fgithub.com%2Ffercol%2FBaSTA&data=05%7C01%7Cmark.brown%40rhul.ac.uk%7C39b6fc766b0a442ed8ca08dbd54129d7%7C2efd699a19224e69b601108008d28a2e%7C0%7C0%7C638338251400961687%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C2000%7C%7C%7C&sdata=zJ83CsW9TzIIdcdCDaqRTlN%2BzW3Ey8ANFlmWzdSFfpw%3D&reserved=0<https://github.com/fercol/BaSTA>
>
> To install an R package from the source within a GitHub repository, you'd
> typically use the `devtools` package in R to install directly from GitHub.
> However, in this case, the package is contained within a subfolder inside
> the repository so `devtools::install_github()` won't work as expected.
>
> Here's how you can manually install the package:
>
> 1) Download the Folder: Download the specific folder containing the R
> package (in this case, it is the pkg folder) to your computer.
> 2) Set Working Directory: In RStudio, navigate to the directory where the
> package folder resides using setwd().
>
> setwd("/path/to/package_folder/pkg")
>
> 3) Install Package: Use `install.packages()` with the `repos = NULL` and
> `type = "source"` parameters. Set the path as ".", to indicate that you are
> currently in the package directory (pkg).
>
> install.packages(".", repos = NULL, type = "source")
>
> 4) Load Package: Finally, load the installed package using library(BaSTA)
>
> I hope this helps!
>
> Best wishes,
> Owen
>
> --
> Owen R. Jones
> Associate Professor
> Faculty of Science
> Department of Biology
> CPop Biology
> T
> +45 65 50 27 91<tel:+4565502791>
> jones at biology.sdu.dk<mailto:jones at biology.sdu.dk>
> https://eur03.safelinks.protection.outlook.com/?url=http%3A%2F%2Fwww.sdu.dk%2Fansat%2Fjones&data=05%7C01%7Cmark.brown%40rhul.ac.uk%7C39b6fc766b0a442ed8ca08dbd54129d7%7C2efd699a19224e69b601108008d28a2e%7C0%7C0%7C638338251400961687%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C2000%7C%7C%7C&sdata=uHN7ao1vP5k1tRXjEN9RokVVfqn8WGp7vr0AEefiTKQ%3D&reserved=0<https://eur03.safelinks.protection.outlook.com/?url=https%3A%2F%2Fwww.sdu.dk%2Fansat%2Fjones&data=05%7C01%7Cmark.brown%40rhul.ac.uk%7C39b6fc766b0a442ed8ca08dbd54129d7%7C2efd699a19224e69b601108008d28a2e%7C0%7C0%7C638338251400961687%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C2000%7C%7C%7C&sdata=O95LKP3sP0%2BNfI3QStwcrwrusqBi4XV158OJWSQtq4k%3D&reserved=0><http://www.sdu.dk/ansat/jones>
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>
>
> From: Basta-users <basta-users-bounces at lists.r-forge.r-project.org> on
> behalf of "Brown, Mark" <Mark.Brown at rhul.ac.uk>
> Date: Saturday, 21 October 2023 at 02:12
> To: "basta-users at lists.r-forge.r-project.org" <
> basta-users at lists.r-forge.r-project.org>
> Subject: [Basta-users] R version to use for BaSTA?
>
> You don't often get email from mark.brown at rhul.ac.uk. Learn why this is
> important<https://aka.ms/LearnAboutSenderIdentification>
> Hi Fernando,
>
> I just went to upload BaSTA to R for the first time, via the archive as
> it?s been removed from the CRAN repository. I went for the most recent
> version (BaSTA_1.9.5.tar.gz<
> https://eur03.safelinks.protection.outlook.com/?url=https%3A%2F%2Fcran.r-project.org%2Fsrc%2Fcontrib%2FArchive%2FBaSTA%2FBaSTA_1.9.5.tar.gz&data=05%7C01%7Cmark.brown%40rhul.ac.uk%7C39b6fc766b0a442ed8ca08dbd54129d7%7C2efd699a19224e69b601108008d28a2e%7C0%7C0%7C638338251400961687%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C2000%7C%7C%7C&sdata=AAHbkDuMa8Cy8ULcBmlSvOOak1uOAe03KsdCWUugfVk%3D&reserved=0>)<https://cran.r-project.org/src/contrib/Archive/BaSTA/BaSTA_1.9.5.tar.gz>
> and got this error message:
>
> Warning in install.packages :
>   package ?BaSTA? is not available for this version of R
>
> I?m using R 4.3.1 Beagle Scouts. Which version of R should I download to
> be able to install and use BaSTA? Sorry if the answer is obvious ? I?m a
> fairly new R user.
>
> Thanks,
>
> Mark
>
>
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> End of Basta-users Digest, Vol 49, Issue 3
> ******************************************
>

--
Alexandre Courtiol, https://eur03.safelinks.protection.outlook.com/?url=http%3A%2F%2Fwww.datazoogang.de%2F&data=05%7C01%7Cmark.brown%40rhul.ac.uk%7C39b6fc766b0a442ed8ca08dbd54129d7%7C2efd699a19224e69b601108008d28a2e%7C0%7C0%7C638338251400961687%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C2000%7C%7C%7C&sdata=j1cBZyGtgg8v5djStQUJ48c1Atk%2FoO05Gvii9mdglec%3D&reserved=0<http://www.datazoogang.de/>
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