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<p class="MsoNormal"><span style="mso-fareast-language:EN-US">Thanks everyone for the incredibly helpful emails – I really appreciate it! What a welcoming and kind community
</span><span style="font-family:"Apple Color Emoji";mso-fareast-language:EN-US">😊</span><span style="mso-fareast-language:EN-US"><o:p></o:p></span></p>
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<p class="MsoNormal" style="margin-bottom:12.0pt"><b><span style="font-size:12.0pt;color:black">From:
</span></b><span style="font-size:12.0pt;color:black">Basta-users <basta-users-bounces@lists.r-forge.r-project.org> on behalf of basta-users-request@lists.r-forge.r-project.org <basta-users-request@lists.r-forge.r-project.org><br>
<b>Date: </b>Wednesday, 25 October 2023 at 11:05<br>
<b>To: </b>basta-users@lists.r-forge.r-project.org <basta-users@lists.r-forge.r-project.org><br>
<b>Subject: </b>[EXT] Basta-users Digest, Vol 49, Issue 4<o:p></o:p></span></p>
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Today's Topics:<br>
<br>
1. Re: Basta-users Digest, Vol 49, Issue 3 (Alexandre Courtiol)<br>
<br>
<br>
----------------------------------------------------------------------<br>
<br>
Message: 1<br>
Date: Wed, 25 Oct 2023 11:43:25 +0200<br>
From: Alexandre Courtiol <alexandre.courtiol@gmail.com><br>
To: basta-users@lists.r-forge.r-project.org<br>
Subject: Re: [Basta-users] Basta-users Digest, Vol 49, Issue 3<br>
Message-ID:<br>
<CAERMt4dS+dbNxx2i48p=dt+3SgNQQEZSdWs8ASXqaPwNE7r6Xw@mail.gmail.com><br>
Content-Type: text/plain; charset="utf-8"<br>
<br>
To install BaSTA from GitHub, you can do simpler:<br>
<br>
remotes::install_github("fercol/BaSTA/pkg")<br>
<br>
Done.<br>
Just make sure that you have the package remotes installed on your system.<br>
FYI, remotes is what is called within devtools, but it is a smaller package<br>
so if you don't have devtools installed, you probably want to install that<br>
one instead.<br>
<br>
<br>
On Wed, 25 Oct 2023 at 11:05, <<br>
basta-users-request@lists.r-forge.r-project.org> wrote:<br>
<br>
> Send Basta-users mailing list submissions to<br>
> basta-users@lists.r-forge.r-project.org<br>
><br>
> To subscribe or unsubscribe via the World Wide Web, visit<br>
><br>
> <a href="https://lists.r-forge.r-project.org/cgi-bin/mailman/listinfo/basta-users">
https://eur03.safelinks.protection.outlook.com/?url=https%3A%2F%2Flists.r-forge.r-project.org%2Fcgi-bin%2Fmailman%2Flistinfo%2Fbasta-users&data=05%7C01%7Cmark.brown%40rhul.ac.uk%7C39b6fc766b0a442ed8ca08dbd54129d7%7C2efd699a19224e69b601108008d28a2e%7C0%7C0%7C638338251400961687%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C2000%7C%7C%7C&sdata=Zrd2bWOu9t1flAV9cH1lcpbbf%2Bcrw%2F9OlgUOoNu7fTc%3D&reserved=0</a><br>
><br>
> or, via email, send a message with subject or body 'help' to<br>
> basta-users-request@lists.r-forge.r-project.org<br>
><br>
> You can reach the person managing the list at<br>
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><br>
> When replying, please edit your Subject line so it is more specific<br>
> than "Re: Contents of Basta-users digest..."<br>
><br>
><br>
> Today's Topics:<br>
><br>
> 1. Re: R version to use for BaSTA? (Owen R. Jones)<br>
><br>
><br>
> ----------------------------------------------------------------------<br>
><br>
> Message: 1<br>
> Date: Tue, 24 Oct 2023 07:58:27 +0000<br>
> From: "Owen R. Jones" <jones@biology.sdu.dk><br>
> To: "Brown, Mark" <Mark.Brown@rhul.ac.uk>,<br>
> "basta-users@lists.r-forge.r-project.org"<br>
> <basta-users@lists.r-forge.r-project.org><br>
> Subject: Re: [Basta-users] R version to use for BaSTA?<br>
> Message-ID: <D904A84A-94E9-4CCD-AF46-13C71DEFCB1C@biology.sdu.dk><br>
> Content-Type: text/plain; charset="utf-8"<br>
><br>
> Hi Mark,<br>
><br>
> I built the attached version from source on my machine running R 4.3.1.<br>
> It should work for you. Otherwise, you could build it from source on your<br>
> own computer.<br>
><br>
> Here?s how to do that?<br>
><br>
> You should visit the GitHub site for the package:<br>
> <a href="https://github.com/fercol/BaSTA">https://eur03.safelinks.protection.outlook.com/?url=https%3A%2F%2Fgithub.com%2Ffercol%2FBaSTA&data=05%7C01%7Cmark.brown%40rhul.ac.uk%7C39b6fc766b0a442ed8ca08dbd54129d7%7C2efd699a19224e69b601108008d28a2e%7C0%7C0%7C638338251400961687%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C2000%7C%7C%7C&sdata=zJ83CsW9TzIIdcdCDaqRTlN%2BzW3Ey8ANFlmWzdSFfpw%3D&reserved=0</a><br>
><br>
> To install an R package from the source within a GitHub repository, you'd<br>
> typically use the `devtools` package in R to install directly from GitHub.<br>
> However, in this case, the package is contained within a subfolder inside<br>
> the repository so `devtools::install_github()` won't work as expected.<br>
><br>
> Here's how you can manually install the package:<br>
><br>
> 1) Download the Folder: Download the specific folder containing the R<br>
> package (in this case, it is the pkg folder) to your computer.<br>
> 2) Set Working Directory: In RStudio, navigate to the directory where the<br>
> package folder resides using setwd().<br>
><br>
> setwd("/path/to/package_folder/pkg")<br>
><br>
> 3) Install Package: Use `install.packages()` with the `repos = NULL` and<br>
> `type = "source"` parameters. Set the path as ".", to indicate that you are<br>
> currently in the package directory (pkg).<br>
><br>
> install.packages(".", repos = NULL, type = "source")<br>
><br>
> 4) Load Package: Finally, load the installed package using library(BaSTA)<br>
><br>
> I hope this helps!<br>
><br>
> Best wishes,<br>
> Owen<br>
><br>
> --<br>
> Owen R. Jones<br>
> Associate Professor<br>
> Faculty of Science<br>
> Department of Biology<br>
> CPop Biology<br>
> T<br>
> +45 65 50 27 91<tel:+4565502791><br>
> jones@biology.sdu.dk<mailto:jones@biology.sdu.dk><br>
> <a href="http://www.sdu.dk/ansat/jones">https://eur03.safelinks.protection.outlook.com/?url=http%3A%2F%2Fwww.sdu.dk%2Fansat%2Fjones&data=05%7C01%7Cmark.brown%40rhul.ac.uk%7C39b6fc766b0a442ed8ca08dbd54129d7%7C2efd699a19224e69b601108008d28a2e%7C0%7C0%7C638338251400961687%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C2000%7C%7C%7C&sdata=uHN7ao1vP5k1tRXjEN9RokVVfqn8WGp7vr0AEefiTKQ%3D&reserved=0<https://eur03.safelinks.protection.outlook.com/?url=https%3A%2F%2Fwww.sdu.dk%2Fansat%2Fjones&data=05%7C01%7Cmark.brown%40rhul.ac.uk%7C39b6fc766b0a442ed8ca08dbd54129d7%7C2efd699a19224e69b601108008d28a2e%7C0%7C0%7C638338251400961687%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C2000%7C%7C%7C&sdata=O95LKP3sP0%2BNfI3QStwcrwrusqBi4XV158OJWSQtq4k%3D&reserved=0></a><br>
> University of Southern Denmark<br>
> Campusvej 55<br>
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> [signature_3077961394]<br>
><br>
><br>
><br>
> From: Basta-users <basta-users-bounces@lists.r-forge.r-project.org> on<br>
> behalf of "Brown, Mark" <Mark.Brown@rhul.ac.uk><br>
> Date: Saturday, 21 October 2023 at 02:12<br>
> To: "basta-users@lists.r-forge.r-project.org" <<br>
> basta-users@lists.r-forge.r-project.org><br>
> Subject: [Basta-users] R version to use for BaSTA?<br>
><br>
> You don't often get email from mark.brown@rhul.ac.uk. Learn why this is<br>
> important<<a href="https://aka.ms/LearnAboutSenderIdentification">https://aka.ms/LearnAboutSenderIdentification</a>><br>
> Hi Fernando,<br>
><br>
> I just went to upload BaSTA to R for the first time, via the archive as<br>
> it?s been removed from the CRAN repository. I went for the most recent<br>
> version (BaSTA_1.9.5.tar.gz<<br>
> <a href="https://cran.r-project.org/src/contrib/Archive/BaSTA/BaSTA_1.9.5.tar.gz">
https://eur03.safelinks.protection.outlook.com/?url=https%3A%2F%2Fcran.r-project.org%2Fsrc%2Fcontrib%2FArchive%2FBaSTA%2FBaSTA_1.9.5.tar.gz&data=05%7C01%7Cmark.brown%40rhul.ac.uk%7C39b6fc766b0a442ed8ca08dbd54129d7%7C2efd699a19224e69b601108008d28a2e%7C0%7C0%7C638338251400961687%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C2000%7C%7C%7C&sdata=AAHbkDuMa8Cy8ULcBmlSvOOak1uOAe03KsdCWUugfVk%3D&reserved=0>)</a><br>
> and got this error message:<br>
><br>
> Warning in install.packages :<br>
> package ?BaSTA? is not available for this version of R<br>
><br>
> I?m using R 4.3.1 Beagle Scouts. Which version of R should I download to<br>
> be able to install and use BaSTA? Sorry if the answer is obvious ? I?m a<br>
> fairly new R user.<br>
><br>
> Thanks,<br>
><br>
> Mark<br>
><br>
><br>
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> ------------------------------<br>
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> End of Basta-users Digest, Vol 49, Issue 3<br>
> ******************************************<br>
><br>
<br>
<br>
-- <br>
Alexandre Courtiol, <a href="http://www.datazoogang.de/">https://eur03.safelinks.protection.outlook.com/?url=http%3A%2F%2Fwww.datazoogang.de%2F&data=05%7C01%7Cmark.brown%40rhul.ac.uk%7C39b6fc766b0a442ed8ca08dbd54129d7%7C2efd699a19224e69b601108008d28a2e%7C0%7C0%7C638338251400961687%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C2000%7C%7C%7C&sdata=j1cBZyGtgg8v5djStQUJ48c1Atk%2FoO05Gvii9mdglec%3D&reserved=0</a><br>
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End of Basta-users Digest, Vol 49, Issue 4<br>
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