[adegenet-forum] first step: creating "genind object" from mtDNA seq

[Thibaut Jombart]

Hi Jenny

You need to read your sequence into R and then convert it to a genind. This
is documented in several places but a starting point is the basics tutorial
- see for instance fasta2DNAbin and DNAbin2genind.

Cheers
Thibaut

On 16 Aug 2016 06:51, "Jennifer Austin" <jenifaus at gmail.com> wrote:

Hello all

I have a dataset of 200 individuals and for each of them there is a 900 bp
sequence of COI with 68 polymorphic sites. I want to use find.clusters
function in the package adegent and I want to know how can I prepare my
dataset to use them in the analysis. Is there any example file that can
help me how to prepare my data?
I would appreciate any help.

Regards,
Jenny

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