[adegenet-commits] r1012 - www
noreply at r-forge.r-project.org
noreply at r-forge.r-project.org
Tue Jun 19 12:27:15 CEST 2012
Author: jombart
Date: 2012-06-19 12:27:15 +0200 (Tue, 19 Jun 2012)
New Revision: 1012
Modified:
www/literature.html
Log:
+1ref
Modified: www/literature.html
===================================================================
--- www/literature.html 2012-06-18 17:10:10 UTC (rev 1011)
+++ www/literature.html 2012-06-19 10:27:15 UTC (rev 1012)
@@ -32,6 +32,7 @@
0);">2008)</span><span style="font-weight: bold; color: rgb(0,
153, 0);"> </span><span style="color: rgb(0, 153, 0);">adegenet:
+
a R package for the multivariate analysis of genetic markers. </span><span
style="font-style: italic; color: rgb(0, 153, 0);">Bioinformatics</span><span
style="color: rgb(0, 153, 0);"> </span><span
@@ -56,6 +57,7 @@
to
+
the bublisher's website</a><span style="color: rgb(0, 153, 0);">]</span>
<img style="width: 80px; height: 37px;" alt=""
src="images/new.png"><br style="color: rgb(0, 153, 0);">
@@ -76,11 +78,13 @@
to the journal's pdf - <a target="_new"
href="http://www.nature.com/hdy/journal/vaop/ncurrent/abs/hdy2008130a.html">free
+
abstract</a>]<br>
<br>
- the paper presenting the <span style="font-style: italic;">spatial
principal
+
component analysis</span> (<span style="font-style: italic;">sPCA</span>,
function <span style="font-family: monospace; color: rgb(255, 0,
0);">spca</span>), global and local tests (<span
@@ -95,6 +99,7 @@
on the journal's website - <a target="_new"
href="http://www.nature.com/hdy/journal/vaop/ncurrent/abs/hdy200834a.html">free
+
abstract</a>]<br>
</div>
<br>
@@ -108,6 +113,7 @@
and
+
simulations of genealoies of haplotypes (<span style="font-family:
monospace; color: rgb(255, 0, 0);">haploGen</span>):<br>
<b>Jombart T, </b>Eggo RM, Dodd PJ, Balloux F (2010)
@@ -121,6 +127,7 @@
Analysis
+
of Principal Components</span> (<span style="font-style:
italic;">DAPC</span>, functions <span style="font-family:
monospace;"><span style="color: rgb(255, 0, 0);">find.clusters</span>
@@ -131,9 +138,9 @@
the analysis of genetically structured populations. <i>BMC
Genetics</i> <strong>11</strong><strong>:</strong>94. <span>doi:10.1186/1471-2156-11-94</span>
[<a href="files/DAPCpaper.pdf">free pdf</a>] [<a
- href="http://www.biomedcentral.com/1471-2156/11/94">free
- html version</a>] [<a href="reviewDAPC.html">evaluation by
- Laurent Excoffier on F1000</a>] <br>
+ href="http://www.biomedcentral.com/1471-2156/11/94">free html
+ version</a>] [<a href="reviewDAPC.html">evaluation by Laurent
+ Excoffier on F1000</a>] <br>
<br>
<br>
<br>
@@ -152,6 +159,7 @@
identification in the rhesus macaque (<em>Macaca mulatta</em>). <span
class="citation-abbreviation"><span style="font-style: italic;">BMC
+
Genomics</span></span><span class="citation-publication-date">
</span><span style="font-weight: bold;" class="citation-volume">9</span><span
class="citation-issue"></span>: 256.<br>
@@ -169,6 +177,7 @@
AI (2009). Hybridization between escaped domestic and wild
American mink (<span style="font-style: italic;">Neovison vison</span>).
+
<span style="font-style: italic;">Molecular Ecology</span> <span
style="font-weight: bold;">18</span>: 1175-1186.<br>
<br>
@@ -176,6 +185,7 @@
Age-specific effect of heterozygosity on survival in alpine
marmots, <span class="i"><span style="font-style: italic;">Marmota
+
marmota</span>.</span><span style="font-style: italic;">
Molecular Ecology</span> <span style="font-weight: bold;">18</span>:
1491-1503.<br>
@@ -217,6 +227,7 @@
Colin J. Garroway and Joanna R. Freeland
(2010) Molecular data provide strong evidence of natural
hybridization between native and introduced lineages of <i>Phragmites
+
australis</i> in North America. <span style="font-style:
italic;">Biological Invasions</span>. doi:
10.1007/s10530-010-9699-6.<br>
@@ -279,8 +290,8 @@
<span class="surname">Lougheed (2010)</span></span> Discordant
patterns of population structure for two co-distributed snake
species across a fragmented Ontario landscape. <span
- style="font-style: italic;">Diversity
- and Distributions.</span> Doi: <span class="doi">10.1111/j.1472-4642.2010.00667.x<br>
+ style="font-style: italic;">Diversity and Distributions.</span>
+ Doi: <span class="doi">10.1111/j.1472-4642.2010.00667.x<br>
<br>
[17] </span><span class="name"><span class="forenames">Francisco</span>
<span class="surname">Balao</span><sup><nobr></nobr></sup></span>,
@@ -313,23 +324,19 @@
</span><span class="authors"><span style="white-space:
nowrap;">[20] Denis Laloë</span>, <span
style="white-space: nowrap;">Katayoun Moazami-Goudarzi</span>,
- <span style="white-space: nowrap;">Johannes
- A. Lenstra</span>, <span style="white-space: nowrap;">Paolo
- Ajmone Marsan</span>, <span style="white-space: nowrap;">Pedro
-
- Azor</span>, <span style="white-space: nowrap;">Roswitha
- Baumung</span>, <span style="white-space: nowrap;">Daniel
- G. Bradley</span>, <span style="white-space: nowrap;">Michael
-
- W. Bruford</span>, <span style="white-space: nowrap;">Javier
-
- Cañón</span>, <span style="white-space:
- nowrap;">Gaudenz Dolf</span>, <span style="white-space:
- nowrap;">Susana Dunner</span>, <span style="white-space:
- nowrap;">Georg Erhardt</span>, <span style="white-space:
- nowrap;">Godfrey Hewitt</span>, <span style="white-space:
- nowrap;">Juha Kantanen</span>, <span style="white-space:
- nowrap;">Gabriela Obexer-Ruff</span>, <span
+ <span style="white-space: nowrap;">Johannes A. Lenstra</span>,
+ <span style="white-space: nowrap;">Paolo Ajmone Marsan</span>,
+ <span style="white-space: nowrap;">Pedro Azor</span>, <span
+ style="white-space: nowrap;">Roswitha Baumung</span>, <span
+ style="white-space: nowrap;">Daniel G. Bradley</span>, <span
+ style="white-space: nowrap;">Michael W. Bruford</span>, <span
+ style="white-space: nowrap;">Javier Cañón</span>,
+ <span style="white-space: nowrap;">Gaudenz Dolf</span>, <span
+ style="white-space: nowrap;">Susana Dunner</span>, <span
+ style="white-space: nowrap;">Georg Erhardt</span>, <span
+ style="white-space: nowrap;">Godfrey Hewitt</span>, <span
+ style="white-space: nowrap;">Juha Kantanen</span>, <span
+ style="white-space: nowrap;">Gabriela Obexer-Ruff</span>, <span
style="white-space: nowrap;">Ingrid Olsaker</span>, <span
style="white-space: nowrap;">Clemen Rodellar</span>, <span
style="white-space: nowrap;">Alessio Valentini</span>, <span
@@ -366,25 +373,28 @@
breed shows a significant contribution from British and Irish
native mares. <a style="font-style: italic;" title="Biology
letters.">Biol Lett.</a><span style="font-style: italic;"> </span>2010
+
Oct 6. [Epub ahead of print]<br>
</p>
<p class="auth_list">[24] SANTOS, H., BURBAN, C., ROUSSELET, J.,
ROSSI, J.-P., BRANCO, M. and KERDELHUÉ, C. , Incipient
allochronic speciation in the pine processionary moth (<em>Thaumetopoea
+
pityocampa</em>, Lepidoptera, Notodontidae). <span
- style="font-style: italic;">Journal
- of Evolutionary Biology</span>, no.
- doi: 10.1111/j.1420-9101.2010.02147.x<br>
+ style="font-style: italic;">Journal of Evolutionary Biology</span>,
+ no. doi: 10.1111/j.1420-9101.2010.02147.x<br>
</p>
<p class="auth_list">[25] Giorgia Ferrara, Rita Cannas, Marco
Stagioni, Giulia Riccioni, Piero Addis, Angelo Cau, Corrado
Piccinetti, FaustoTinti (2010) Fishery genetics of
mediterranean bluefin tuna: review of existing data, on-going
studies and perspectives. <span style="font-style: italic;">Collect.
+
Vol. Sci. Pap. ICCAT</span>, 65(3): 988-995</p>
<p class="intro">[26] <span class="citation_author">Vandewoestijne
+
S, </span> <span class="citation_author">Van Dyck H, </span>
<span class="citation_date">2010</span> <span
class="citation_article_title">Population Genetic
@@ -392,6 +402,7 @@
Recently Colonized Habitat in a Butterfly. </span> <span
style="font-style: italic;" class="citation_journal_title">PLoS
+
ONE</span><span class="citation_issue"> 5(11):</span> <span
class="citation_start_page">e13810.</span> <span
class="citation_doi">doi:10.1371/journal.pone.0013810<br>
@@ -408,6 +419,7 @@
SNP discovery method and sample size on estimation of
population genetic data for Chinese and Indian rhesus macaques
(<i>Macaca mulatta</i>). <span style="font-style: italic;">Primates:
+
</span><span class="doi"><span class="label">DOI:</span> <span
class="value">10.1007/s10329-010-0232-4<br>
</span></span></p>
@@ -462,6 +474,7 @@
J., NEWMAN, S. J. and Van HERWERDEN, L. (2011), Limited
ecological population connectivity suggests low demands on
self-recruitment in a tropical inshore marine fish (<em>Eleutheronema
+
tetradactylum</em>: Polynemidae). Molecular Ecology,
20: no. doi: 10.1111/j.1365-294X.2011.05097.x<br>
</p>
@@ -474,6 +487,7 @@
class="citation_date">2011</span> <span
class="citation_article_title">Low Diversity <i>Cryptococcus
+
neoformans</i> Variety <i>grubii</i> Multilocus Sequence
Types from Thailand Are Consistent with an Ancestral African
Origin.</span> <span class="citation_journal_title">PLoS
@@ -492,6 +506,7 @@
class="hit"> Devillard</span>, M.P. Demar, B. de Thoisy, H.
Bonnabau, F. Collinet, R. Boukhari, D. Blanchet, S. Simon, B.
Carme, M.-L. Dardé (<span style="font-style: italic;">in
+
press</span>) Human impact on genetic diversity of <span
style="font-style: italic;">Toxoplasma gondii</span>:
Example of the anthropized environment from French Guiana. <br>
@@ -513,6 +528,7 @@
Jindřich ; Plačková, Ivana ;Mráz, Patrik (2001)
Allozyme Variation in Diploid, Polyploid and Mixed-Ploidy
Populations of the <span style="font-style: italic;">Pilosella
+
alpicola</span> Group (Asteraceae): Relation to Morphology,
Origin of Polyploids and Breeding System . Folia Geobotanica:
1-24. Doi: 10.1007/s12224-011-9102-0<br>
@@ -722,6 +738,7 @@
genetic signal of current connectivity among populations.
GENETICA - <span style="font-style: italic;">Online first. </span>DOI:
+
10.1007/s10709-012-9640-2<br>
<br>
[76] Samantha Baldwin, Meeghan Pither-Joyce, Kathryn Wright,
@@ -858,7 +875,11 @@
Canada lynx populations across mainland North America. <span
style="font-style: italic;">Conservation Genetics</span>. DOI:
10.1007/s10592-012-0369-3
- <p class="intro"><br>
+ <p class="intro">[99] Henry P, Sim Z, Russello MA (2012) Genetic
+ Evidence for Restricted Dispersal along Continuous Altitudinal
+ Gradients in a Climate Change-Sensitive Mammal: The American
+ Pika. PLoS ONE 7(6): e39077. doi:10.1371/journal.pone.0039077<br>
+ <br>
</p>
<p class="intro">* adegenet not or wrongly cited, but actually
used in the paper. <br>
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