[adegenet-commits] r1011 - www
noreply at r-forge.r-project.org
noreply at r-forge.r-project.org
Mon Jun 18 19:10:10 CEST 2012
Author: jombart
Date: 2012-06-18 19:10:10 +0200 (Mon, 18 Jun 2012)
New Revision: 1011
Modified:
www/literature.html
Log:
+1ref
Modified: www/literature.html
===================================================================
--- www/literature.html 2012-06-12 09:09:55 UTC (rev 1010)
+++ www/literature.html 2012-06-18 17:10:10 UTC (rev 1011)
@@ -31,8 +31,8 @@
color: rgb(0, 153, 0);"></span><span style="color: rgb(0, 153,
0);">2008)</span><span style="font-weight: bold; color: rgb(0,
153, 0);"> </span><span style="color: rgb(0, 153, 0);">adegenet:
- a R package for the
- multivariate analysis of genetic markers. </span><span
+
+ a R package for the multivariate analysis of genetic markers. </span><span
style="font-style: italic; color: rgb(0, 153, 0);">Bioinformatics</span><span
style="color: rgb(0, 153, 0);"> </span><span
style="font-weight: bold; color: rgb(0, 153, 0);">24</span><span
@@ -45,16 +45,17 @@
<span style="color: rgb(0, 153, 0);">Jombart T. and Ahmed I.
(2011) </span><span style="font-style: italic; color: rgb(0,
153, 0);">adegenet 1.3-1</span><span style="color: rgb(0, 153,
- 0);">: new tools for the analysis of
- genome-wide SNP data. </span><span style="font-style: italic;
- color: rgb(0, 153, 0);">Bioinformatics</span><span style="color:
- rgb(0, 153, 0);">. doi: 10.1093/bioinformatics/btr521 [</span><a
- style="color: rgb(0, 153, 0);"
+ 0);">: new tools for the analysis of genome-wide SNP data. </span><span
+ style="font-style: italic; color: rgb(0, 153, 0);">Bioinformatics</span><span
+ style="color: rgb(0, 153, 0);">. doi:
+ 10.1093/bioinformatics/btr521 [</span><a style="color: rgb(0,
+ 153, 0);"
href="http://bioinformatics.oxfordjournals.org/content/early/2011/09/16/bioinformatics.btr521">link
to
+
the bublisher's website</a><span style="color: rgb(0, 153, 0);">]</span>
<img style="width: 80px; height: 37px;" alt=""
src="images/new.png"><br style="color: rgb(0, 153, 0);">
@@ -64,55 +65,54 @@
<span style="text-decoration: underline;">Related publications:<br>
<br style="text-decoration: underline;">
</span>- a review of applications of multivariate analyses to
- genetic
- markers data:<br>
+ genetic markers data:<br>
<b>Jombart T</b>, Pontier D, Dufour AB. (2009) <span
style="font-style: italic;"></span> Genetic markers in the
- playground
- of multivariate analysis. <span style="font-style: italic;">Heredity
- </span><span style="font-weight: bold;">102</span>: 330-341.
- doi:10.1038/hdy.2008.130<span style="font-style: italic;">. </span>[<a
+ playground of multivariate analysis. <span style="font-style:
+ italic;">Heredity </span><span style="font-weight: bold;">102</span>:
+ 330-341. doi:10.1038/hdy.2008.130<span style="font-style: italic;">.
+ </span>[<a
href="http://www.nature.com/hdy/journal/vaop/ncurrent/pdf/hdy2008130a.pdf">link</a>
to the journal's pdf - <a target="_new"
href="http://www.nature.com/hdy/journal/vaop/ncurrent/abs/hdy2008130a.html">free
+
abstract</a>]<br>
<br>
- the paper presenting the <span style="font-style: italic;">spatial
principal
+
component analysis</span> (<span style="font-style: italic;">sPCA</span>,
function <span style="font-family: monospace; color: rgb(255, 0,
- 0);">spca</span>),
- global and local tests (<span style="font-family: monospace;
- color: rgb(255, 0, 0);">global.rtest</span>
+ 0);">spca</span>), global and local tests (<span
+ style="font-family: monospace; color: rgb(255, 0, 0);">global.rtest</span>
and <span style="font-family: monospace; color: rgb(255, 0, 0);">local.rtest</span>):<br>
<b>Jombart T, </b>Devillard S, Dufour AB, Pontier D<b> </b>(2008)<b>
- </b>Revealing
- cryptic spatial patterns in genetic variability by a new
- multivariate
- method. <span style="font-style: italic;">Heredity</span> <span
- style="font-weight: bold;">101</span>: 92-103. doi:
+ </b>Revealing cryptic spatial patterns in genetic variability by a
+ new multivariate method. <span style="font-style: italic;">Heredity</span>
+ <span style="font-weight: bold;">101</span>: 92-103. doi:
10.1038/hdy.2008.34 [<a
href="http://www.nature.com/hdy/journal/vaop/ncurrent/pdf/hdy200834a.pdf">link</a>
on the journal's website - <a target="_new"
href="http://www.nature.com/hdy/journal/vaop/ncurrent/abs/hdy200834a.html">free
+
abstract</a>]<br>
</div>
<br>
<div style="margin-left: 40px;"><span style="font-family: monospace;
font-weight: bold;"></span><span style="font-family: monospace;
- font-weight: bold;"></span>- the paper
- presenting the <span style="font-style: italic;">SeqTrack </span>algorithm
- (<span style="font-family: monospace; color: rgb(255, 0, 0);">seqTrack</span>),
+ font-weight: bold;"></span>- the paper presenting the <span
+ style="font-style: italic;">SeqTrack </span>algorithm (<span
+ style="font-family: monospace; color: rgb(255, 0, 0);">seqTrack</span>),
and
+
simulations of genealoies of haplotypes (<span style="font-family:
monospace; color: rgb(255, 0, 0);">haploGen</span>):<br>
<b>Jombart T, </b>Eggo RM, Dodd PJ, Balloux F (2010)
- Reconstructing
- disease outbreaks from genetic data: a graph approach. <span
- style="font-style: italic;">Heredity</span>. Doi:
+ Reconstructing disease outbreaks from genetic data: a graph
+ approach. <span style="font-style: italic;">Heredity</span>. Doi:
10.1038/hdy.2010.78<br>
<br>
- the paper introducing the <span style="font-style: italic;">Discriminant
@@ -120,6 +120,7 @@
Analysis
+
of Principal Components</span> (<span style="font-style:
italic;">DAPC</span>, functions <span style="font-family:
monospace;"><span style="color: rgb(255, 0, 0);">find.clusters</span>
@@ -127,15 +128,12 @@
0, 0);">dapc</span>):<br>
<b>Jombart T</b>, Devillard S and Balloux F <b> </b>(2010)
Discriminant analysis of principal components: a new method for
- the
- analysis of genetically structured populations. <i>BMC Genetics</i>
- <strong>11</strong><strong>:</strong>94.
- <span>doi:10.1186/1471-2156-11-94</span> [<a
- href="files/DAPCpaper.pdf">free
- pdf</a>] [<a href="http://www.biomedcentral.com/1471-2156/11/94">free
-html
- version</a>] [<a href="reviewDAPC.html">evaluation by Laurent
- Excoffier on F1000</a>] <br>
+ the analysis of genetically structured populations. <i>BMC
+ Genetics</i> <strong>11</strong><strong>:</strong>94. <span>doi:10.1186/1471-2156-11-94</span>
+ [<a href="files/DAPCpaper.pdf">free pdf</a>] [<a
+ href="http://www.biomedcentral.com/1471-2156/11/94">free
+ html version</a>] [<a href="reviewDAPC.html">evaluation by
+ Laurent Excoffier on F1000</a>] <br>
<br>
<br>
<br>
@@ -143,151 +141,124 @@
adegenet:</span><br style="text-decoration: underline;">
<br>
[1] Cohas A, Yoccoz NG, Bonenfant C, Goossens B, Genton C, Galan
- M,
- Kempenaers B, Allainé D (2007) The<span style="color:
+ M, Kempenaers B, Allainé D (2007) The<span style="color:
rgb(0, 0, 0);"> genetic similarity between pair members
influences the frequency of extrapair paternity in alpine
- marmots</span>.
- <i>Animal Behaviour</i><i> </i><span style="font-weight: bold;">76</span>:
- 87-95.<br>
+ marmots</span>. <i>Animal Behaviour</i><i> </i><span
+ style="font-weight: bold;">76</span>: 87-95.<br>
<br>
[2] Satkoski JA, Malhi RS, Kanthaswamy S, Tito RY, Malladi
- VS,
- Smith DG (2008) Pyrosequencing as a method for SNP identification
- in
- the rhesus macaque (<em>Macaca mulatta</em>). <span
+ VS, Smith DG (2008) Pyrosequencing as a method for SNP
+ identification in the rhesus macaque (<em>Macaca mulatta</em>). <span
class="citation-abbreviation"><span style="font-style: italic;">BMC
+
Genomics</span></span><span class="citation-publication-date">
</span><span style="font-weight: bold;" class="citation-volume">9</span><span
class="citation-issue"></span>: 256.<br>
<div><span class="citation-flpages"><br>
[3] </span>Kanthaswamy S, Satkoski J, George D, Kou A,
- Erickson BJ,
- Smith DG. (2008). Interspecies hybridization and the
- stratification of
- nuclear genetic variation of rhesus (<span style="font-style:
- italic;">Macaca
- mulatta</span>) and long-tailed macaques (<span
- style="font-style: italic;">Macaca </span><span
+ Erickson BJ, Smith DG. (2008). Interspecies hybridization and
+ the stratification of nuclear genetic variation of rhesus (<span
+ style="font-style: italic;">Macaca mulatta</span>) and
+ long-tailed macaques (<span style="font-style: italic;">Macaca </span><span
style="font-style: italic;">fascicularis</span>). <span
style="font-style: italic;">Int J Primatol</span> <span
style="font-weight: bold;">29</span>: 1295-1311.<br>
<br>
[4] Kidd, AG, Bowman J, Lesbarrères D, Schulte-Hostedde
- AI
- (2009). Hybridization between escaped domestic and wild American
- mink (<span style="font-style: italic;">Neovison vison</span>).
+ AI (2009). Hybridization between escaped domestic and wild
+ American mink (<span style="font-style: italic;">Neovison vison</span>).
+
<span style="font-style: italic;">Molecular Ecology</span> <span
style="font-weight: bold;">18</span>: 1175-1186.<br>
<br>
[5] Cohas E, Bonenfant C, Kempaners B, Allainé D (2009).
Age-specific effect of heterozygosity on survival in alpine
marmots, <span class="i"><span style="font-style: italic;">Marmota
+
marmota</span>.</span><span style="font-style: italic;">
Molecular Ecology</span> <span style="font-weight: bold;">18</span>:
1491-1503.<br>
<br>
[6] O'Brien J, Devillard S, Say L, Vanthomme A, Léger F,
- Ruette
- S, Pontier D (2009). Preserving genetic integrity in a
- hybridising
- world:<br>
+ Ruette S, Pontier D (2009). Preserving genetic integrity in a
+ hybridising world:<br>
are European Wildcats (<span style="font-style: italic;">Felis
silvestris silvestris</span>) in eastern France distinct from
- sympatric
- feral domestic cats? <span style="font-style: italic;">Biodivers
- Conserv</span> <span style="font-weight: bold;">18</span>:
- 2351-2360.<br>
+ sympatric feral domestic cats? <span style="font-style:
+ italic;">Biodivers Conserv</span> <span style="font-weight:
+ bold;">18</span>: 2351-2360.<br>
<br>
[7] Kanthaswamy S <span style="font-style: italic;">et al.</span>
(2009). Canine Population Data Generated from a Multiplex STR
- Kit for
- Use in Forensic Casework. <span style="font-style: italic;">Journal
- of
- Forensic Sciences</span> <span style="font-weight: bold;">54</span>:
- 829-840.<br>
+ Kit for Use in Forensic Casework. <span style="font-style:
+ italic;">Journal of Forensic Sciences</span> <span
+ style="font-weight: bold;">54</span>: 829-840.<br>
<br>
[8] Lankau R A, Nuzzo V, Spyreas G, Davis A S (2009).
- Evolutionary
- limits ameliorate the negative impact of an invasive plant. <span
- style="font-style: italic;">Proceedings of the National
- Academy of
- Sciences</span> <span style="font-weight: bold;">106</span>:
- 15362-15367.<br>
+ Evolutionary limits ameliorate the negative impact of an
+ invasive plant. <span style="font-style: italic;">Proceedings
+ of the National Academy of Sciences</span> <span
+ style="font-weight: bold;">106</span>: 15362-15367.<br>
<br>
[9] Dutech C, Fabreguettes O, Capdevielle X, Robin C (2009)
- Multiple
- introductions of divergent genetic lineages in an invasive
- fungal
- pathogen, Cryphonectria parasitica, in France. <span
+ Multiple introductions of divergent genetic lineages in an
+ invasive fungal pathogen, Cryphonectria parasitica, in France. <span
style="font-style: italic;">Heredity</span> (advanced online)
- doi:
- 10.1038/hdy.2009.164.<br>
+ doi: 10.1038/hdy.2009.164.<br>
<br>
[10] L Y Rutledge, C J Garroway, K M Loveless and
- B
- R Patterson (2010) Genetic differentiation of eastern
- wolves in
- Algonquin Park despite bridging gene flow between coyotes and
- grey
- wolves.<span style="font-style: italic;"> Heredity</span>
- (advanced
- online) doi: 10.1038/hdy.2010.6.<br>
+ B R Patterson (2010) Genetic differentiation of eastern
+ wolves in Algonquin Park despite bridging gene flow between
+ coyotes and grey wolves.<span style="font-style: italic;">
+ Heredity</span> (advanced online) doi: 10.1038/hdy.2010.6.<br>
<br>
[11] Jennifer Paul, Nicole Vachon,
Colin J. Garroway and Joanna R. Freeland
- (2010)
- Molecular data provide strong evidence of natural hybridization
- between
- native and introduced lineages of <i>Phragmites australis</i>
- in North
- America. <span style="font-style: italic;">Biological Invasions</span>.
- doi: 10.1007/s10530-010-9699-6.<br>
+ (2010) Molecular data provide strong evidence of natural
+ hybridization between native and introduced lineages of <i>Phragmites
+ australis</i> in North America. <span style="font-style:
+ italic;">Biological Invasions</span>. doi:
+ 10.1007/s10530-010-9699-6.<br>
<br>
[12] C. BERTHOULY, D. DO NGOC, S. THÉVENON, D. BOUCHEL,
- T. NHU
- VAN, C. DANES, V. GROSBOIS, H. HOANG THANH, C. VU CHI, J.-C.
- MAILLARD
- (2009) How does farmer connectivity influence livestock genetic
- structure? A case-study in a Vietnamese goat population. <span
- style="font-style: italic;">Molecular Ecology</span> <span
- style="font-weight: bold;">18</span>: 3980-3991<br>
+ T. NHU VAN, C. DANES, V. GROSBOIS, H. HOANG THANH, C. VU CHI,
+ J.-C. MAILLARD (2009) How does farmer connectivity influence
+ livestock genetic structure? A case-study in a Vietnamese goat
+ population. <span style="font-style: italic;">Molecular Ecology</span>
+ <span style="font-weight: bold;">18</span>: 3980-3991<br>
<br>
[13] <span class="name"><span class="forenames">COLIN J.</span>
<span class="surname">GARROWAY</span><sup><nobr></nobr></sup></span>,
<span class="name"><span class="forenames">JEFF</span> <span
- class="surname">BOWMAN</span></span>,
- <span class="name"><span class="forenames">TARA J.</span> <span
- class="surname">CASCADEN</span></span>, <span class="name"><span
- class="forenames">GILLIAN L.</span> <span class="surname">HOLLOWAY</span></span>,
- <span class="name"><span class="forenames">CAROLYN G.</span> <span
- class="surname">MAHAN</span></span>, <span class="name"><span
- class="forenames">JAY R.</span> <span class="surname">MALCOLM</span></span>,
- <span class="name"><span class="forenames">MICHAEL A.</span> <span
- class="surname">STEELE</span><sup><nobr></nobr></sup></span>,
+ class="surname">BOWMAN</span></span>, <span class="name"><span
+ class="forenames">TARA J.</span> <span class="surname">CASCADEN</span></span>,
+ <span class="name"><span class="forenames">GILLIAN L.</span> <span
+ class="surname">HOLLOWAY</span></span>, <span class="name"><span
+ class="forenames">CAROLYN G.</span> <span class="surname">MAHAN</span></span>,
+ <span class="name"><span class="forenames">JAY R.</span> <span
+ class="surname">MALCOLM</span></span>, <span class="name"><span
+ class="forenames">MICHAEL A.</span> <span class="surname">STEELE</span><sup><nobr></nobr></sup></span>,
<span class="name"><span class="forenames">GREGORY</span> <span
class="surname">TURNER</span></span> and <span class="name"><span
class="forenames">PAUL J.</span> <span class="surname">WILSON</span>
(2009) </span>Climate change induced hybridization in flying
squirrels. <span style="font-style: italic;">Global Change
- Biology</span>
- <span style="font-weight: bold;">16</span>: 113-121.<br>
+ Biology</span> <span style="font-weight: bold;">16</span>:
+ 113-121.<br>
<br>
[14] <span class="name"><span class="forenames">JOSSELIN</span>
<span class="surname">MONTARRY</span></span>, <span
class="name"><span class="forenames">DIDIER</span> <span
- class="surname">ANDRIVON</span>,</span>
- <span class="name"><span class="forenames">ISABELLE</span> <span
- class="surname">GLAIS</span></span>, <span class="name"><span
- class="forenames">ROSELYNE</span> <span class="surname">CORBIERE</span></span>,
- <span class="name"><span class="forenames">GLADYS</span> <span
- class="surname">MIALDEA</span></span> and <span
- class="name"><span class="forenames">FRANCOIS</span> <span
- class="surname">DELMOTTE
- (2010)</span></span> Microsatellite markers reveal two
- admixed genetic
- groups and an ongoing displacement within the French population
- of the
+ class="surname">ANDRIVON</span>,</span> <span class="name"><span
+ class="forenames">ISABELLE</span> <span class="surname">GLAIS</span></span>,
+ <span class="name"><span class="forenames">ROSELYNE</span> <span
+ class="surname">CORBIERE</span></span>, <span class="name"><span
+ class="forenames">GLADYS</span> <span class="surname">MIALDEA</span></span>
+ and <span class="name"><span class="forenames">FRANCOIS</span>
+ <span class="surname">DELMOTTE (2010)</span></span>
+ Microsatellite markers reveal two admixed genetic groups and an
+ ongoing displacement within the French population of the
invasive plant pathogen <span class="i"><span
style="font-style: italic;">Phytophthora infestans</span>. <span
style="font-style: italic;">Molecular Ecology</span> <span
@@ -296,24 +267,20 @@
<br>
[15] Gwenaelle Comont, Marie-France Corio-Costet,
Philippe Larignon and François Delmotte (2010)
- AFLP
- markers reveal two genetic groups in the French population of
- the
- grapevine fungal pathogen <i>Phaeomoniella chlamydospora.
- European
- Journal of Plant Pathology</i> Doi: 10.1007/s10658-010-9611-3<br>
+ AFLP markers reveal two genetic groups in the French population
+ of the grapevine fungal pathogen <i>Phaeomoniella
+ chlamydospora. European Journal of Plant Pathology</i> Doi:
+ 10.1007/s10658-010-9611-3<br>
<br>
[16] <span class="name"><span class="forenames">Michelle F.</span>
<span class="surname">DiLeo</span></span>, <span class="name"><span
class="forenames">Jeffrey R.</span> <span class="surname">Row</span></span>
and <span class="name"><span class="forenames">Stephen C.</span>
<span class="surname">Lougheed (2010)</span></span> Discordant
- patterns of
- population structure for two co-distributed snake species across
- a
- fragmented Ontario landscape. <span style="font-style: italic;">Diversity
-and
- Distributions.</span> Doi: <span class="doi">10.1111/j.1472-4642.2010.00667.x<br>
+ patterns of population structure for two co-distributed snake
+ species across a fragmented Ontario landscape. <span
+ style="font-style: italic;">Diversity
+ and Distributions.</span> Doi: <span class="doi">10.1111/j.1472-4642.2010.00667.x<br>
<br>
[17] </span><span class="name"><span class="forenames">Francisco</span>
<span class="surname">Balao</span><sup><nobr></nobr></sup></span>,
@@ -325,40 +292,37 @@
class="surname">Herrera</span><sup><nobr></nobr></sup> </span>
and <span class="name"><span class="forenames">Salvador</span>
<span class="surname">Talavera</span> (2010)</span> Radiative
- evolution of
- polyploid races of the Iberian carnation <span class="i">Dianthus
- broteri</span> (Caryophyllaceae).<span class="name"> <sup
- style="font-style: italic;"><nobr></nobr></sup></span><span
+ evolution of polyploid races of the Iberian carnation <span
+ class="i">Dianthus broteri</span> (Caryophyllaceae).<span
+ class="name"> <sup style="font-style: italic;"><nobr></nobr></sup></span><span
class="doi"><span style="font-style: italic;">New Phytologist.
</span>Doi:</span><span class="doi">
10.1111/j.1469-8137.2010.03280.x<br>
<br>
[18] </span>Gadieux P, Caffier V , Devaux M , Le Cam B(2010)
Host-specific differentiation among populations of Venturia
- inaegualis
- causing scab on apple, pyracantha and loquat. <span
+ inaegualis causing scab on apple, pyracantha and loquat. <span
style="font-style: italic;">FUNGAL GENETICS AND BIOLOGY</span>
- ,
- 47: 511-521<br>
+ , 47: 511-521<br>
<span style="display: block;" id="records_chunks"><br>
[19] Joost S, Colli L, Baret PV, et al. (2010) Integrating
geo-referenced multiscale and multidisciplinary data for the
- management
- of biodiversity in livestock genetic resources. <span
+ management of biodiversity in livestock genetic resources. <span
style="font-style: italic;">Animal Genetics </span><span
style="font-weight: bold;">41</span>: 47-63.<br>
</span><span class="authors"><span style="white-space:
- nowrap;">[20]
- Denis Laloë</span>, <span style="white-space: nowrap;">Katayoun
- Moazami-Goudarzi</span>, <span style="white-space: nowrap;">Johannes
-A.
- Lenstra</span>, <span style="white-space: nowrap;">Paolo
- Ajmone
- Marsan</span>, <span style="white-space: nowrap;">Pedro
+ nowrap;">[20] Denis Laloë</span>, <span
+ style="white-space: nowrap;">Katayoun Moazami-Goudarzi</span>,
+ <span style="white-space: nowrap;">Johannes
+ A. Lenstra</span>, <span style="white-space: nowrap;">Paolo
+ Ajmone Marsan</span>, <span style="white-space: nowrap;">Pedro
+
Azor</span>, <span style="white-space: nowrap;">Roswitha
Baumung</span>, <span style="white-space: nowrap;">Daniel
G. Bradley</span>, <span style="white-space: nowrap;">Michael
+
W. Bruford</span>, <span style="white-space: nowrap;">Javier
+
Cañón</span>, <span style="white-space:
nowrap;">Gaudenz Dolf</span>, <span style="white-space:
nowrap;">Susana Dunner</span>, <span style="white-space:
@@ -371,21 +335,18 @@
style="white-space: nowrap;">Alessio Valentini</span>, <span
style="white-space: nowrap;">Pamela Wiener</span> and <span
style="white-space: nowrap;"> European Cattle Genetic
- Diversity
- Consortium and Econogene Consortium</span></span> (2010) <span
- class="title">Spatial Trends of Genetic Variation of Domestic
- Ruminants in Europe</span>. <span class="idnt"><em>Diversity</em>
- <b>2010</b>,
- <em>2</em>(6), 932-945; doi:10.3390/d2060932</span><br>
+ Diversity Consortium and Econogene Consortium</span></span>
+ (2010) <span class="title">Spatial Trends of Genetic Variation
+ of Domestic Ruminants in Europe</span>. <span class="idnt"><em>Diversity</em>
+ <b>2010</b>, <em>2</em>(6), 932-945; doi:10.3390/d2060932</span><br>
<span style="display: block;" id="records_chunks"><br>
</span><span class="citation_author">[21] Gautier M, </span> <span
class="citation_author">Laloë D, </span> <span
class="citation_author">Moazami-Goudarzi K, </span> <span
class="citation_date">2010</span> <span
- class="citation_article_title">Insights
- into the Genetic History of French Cattle from Dense SNP Data
- on 47
- Worldwide Breeds. </span> <span style="font-style: italic;"
+ class="citation_article_title">Insights into the Genetic
+ History of French Cattle from Dense SNP Data on 47 Worldwide
+ Breeds. </span> <span style="font-style: italic;"
class="citation_journal_title">PLoS ONE</span><span
class="citation_issue"> <span style="font-weight: bold;">5(9)</span>:</span>
<span class="citation_start_page">e13038.</span> <span
@@ -393,105 +354,79 @@
class="citation_author">a<br>
<br>
</span>[22] Morris, C. E., D. C. Sands, J. L. Vanneste, J.
- Montarry, B.
- Oakley, et al. 2010. Inferring the evolutionary history of the
- plant
- pathogen <em>Pseudomonas syringae</em> from its biogeography in
- headwaters of rivers in North America, Europe, and New Zealand.
- <span style="font-style: italic;">mBio </span>1(3):e00107-10.
- doi:10.1128/mBio.00107-10. <br>
+ Montarry, B. Oakley, et al. 2010. Inferring the evolutionary
+ history of the plant pathogen <em>Pseudomonas syringae</em>
+ from its biogeography in headwaters of rivers in North America,
+ Europe, and New Zealand. <span style="font-style: italic;">mBio
+ </span>1(3):e00107-10. doi:10.1128/mBio.00107-10. <br>
<p class="auth_list"><a title="Biology letters.">[23] </a>Bower
- MA,
- Campana MG, Whitten M, Edwards CJ, Jones H, Barrett E, Cassidy
- R,
- Nisbet RE, Hill EW, Howe CJ, Binns M (2010) The cosmopolitan
- maternal
- heritage of the Thoroughbred racehorse breed shows a
- significant
- contribution from British and Irish native mares. <a
- style="font-style: italic;" title="Biology letters.">Biol
- Lett.</a><span style="font-style: italic;"> </span>2010 Oct
- 6. [Epub
- ahead of print]<br>
+ MA, Campana MG, Whitten M, Edwards CJ, Jones H, Barrett E,
+ Cassidy R, Nisbet RE, Hill EW, Howe CJ, Binns M (2010) The
+ cosmopolitan maternal heritage of the Thoroughbred racehorse
+ breed shows a significant contribution from British and Irish
+ native mares. <a style="font-style: italic;" title="Biology
+ letters.">Biol Lett.</a><span style="font-style: italic;"> </span>2010
+ Oct 6. [Epub ahead of print]<br>
</p>
<p class="auth_list">[24] SANTOS, H., BURBAN, C., ROUSSELET, J.,
- ROSSI,
- J.-P., BRANCO, M. and KERDELHUÉ, C. , Incipient
- allochronic
- speciation in the pine processionary moth (<em>Thaumetopoea
- pityocampa</em>,
- Lepidoptera, Notodontidae). <span style="font-style: italic;">Journal
-of
- Evolutionary Biology</span>, no.
+ ROSSI, J.-P., BRANCO, M. and KERDELHUÉ, C. , Incipient
+ allochronic speciation in the pine processionary moth (<em>Thaumetopoea
+
+ pityocampa</em>, Lepidoptera, Notodontidae). <span
+ style="font-style: italic;">Journal
+ of Evolutionary Biology</span>, no.
doi: 10.1111/j.1420-9101.2010.02147.x<br>
</p>
<p class="auth_list">[25] Giorgia Ferrara, Rita Cannas, Marco
- Stagioni,
- Giulia Riccioni, Piero Addis, Angelo Cau, Corrado Piccinetti,
- FaustoTinti (2010) Fishery genetics of mediterranean bluefin
- tuna:
- review of existing data, on-going studies and perspectives. <span
- style="font-style: italic;">Collect. Vol. Sci. Pap. ICCAT</span>,
- 65(3): 988-995</p>
+ Stagioni, Giulia Riccioni, Piero Addis, Angelo Cau, Corrado
+ Piccinetti, FaustoTinti (2010) Fishery genetics of
+ mediterranean bluefin tuna: review of existing data, on-going
+ studies and perspectives. <span style="font-style: italic;">Collect.
+ Vol. Sci. Pap. ICCAT</span>, 65(3): 988-995</p>
<p class="intro">[26] <span class="citation_author">Vandewoestijne
- S, </span>
- <span class="citation_author">Van Dyck H, </span> <span
- class="citation_date">2010</span> <span
- class="citation_article_title">Population
- Genetic Differences along a Latitudinal Cline between
- Original and
+
+ S, </span> <span class="citation_author">Van Dyck H, </span>
+ <span class="citation_date">2010</span> <span
+ class="citation_article_title">Population Genetic
+ Differences along a Latitudinal Cline between Original and
Recently Colonized Habitat in a Butterfly. </span> <span
style="font-style: italic;" class="citation_journal_title">PLoS
+
ONE</span><span class="citation_issue"> 5(11):</span> <span
class="citation_start_page">e13810.</span> <span
class="citation_doi">doi:10.1371/journal.pone.0013810<br>
</span></p>
<p class="intro">[27] Lagisz, M., Port, G. and Wolff, K. (2011)
- Living
- in a jar: genetic variation and differentiation among
- laboratory
- strains of the red flour beetle. <span style="font-style:
- italic;">Journal
- of Applied Entomology</span>, no.
- doi: 10.1111/j.1439-0418.2010.01593.x<br>
+ Living in a jar: genetic variation and differentiation among
+ laboratory strains of the red flour beetle. <span
+ style="font-style: italic;">Journal of Applied Entomology</span>,
+ no. doi: 10.1111/j.1439-0418.2010.01593.x<br>
</p>
<p class="authors">[28] Jessica A. Satkoski Trask, Ripan S.
- Malhi, Sree
- Kanthaswamy, Jesse Johnson, Wendy T. Garnica, Venkat S.
- Malladi and
- David Glenn Smith.(2011) The effect of SNP discovery method
- and sample
- size on estimation of population genetic data for Chinese and
- Indian
- rhesus macaques (<i>Macaca mulatta</i>). <span
- style="font-style: italic;">Primates: </span><span
- class="doi"><span class="label">DOI:</span> <span
+ Malhi, Sree Kanthaswamy, Jesse Johnson, Wendy T. Garnica,
+ Venkat S. Malladi and David Glenn Smith.(2011) The effect of
+ SNP discovery method and sample size on estimation of
+ population genetic data for Chinese and Indian rhesus macaques
+ (<i>Macaca mulatta</i>). <span style="font-style: italic;">Primates:
+ </span><span class="doi"><span class="label">DOI:</span> <span
class="value">10.1007/s10329-010-0232-4<br>
</span></span></p>
<p class="auth_list">[29] HELYAR, S. J., HEMMER-HANSEN, J.,
- BEKKEVOLD,
- D., TAYLOR, M. I., OGDEN, R., LIMBORG, M. T., CARIANI, A.,
- MAES, G. E.,
- DIOPERE, E., CARVALHO, G. R. and NIELSEN, E. E. , Application
- of SNPs
- for population genetics of nonmodel organisms: new
- opportunities and
- challenges. <span style="font-style: italic;">Molecular
- Ecology
- Resources</span>, no.
- doi: 10.1111/j.1755-0998.2010.02943.x<br>
+ BEKKEVOLD, D., TAYLOR, M. I., OGDEN, R., LIMBORG, M. T.,
+ CARIANI, A., MAES, G. E., DIOPERE, E., CARVALHO, G. R. and
+ NIELSEN, E. E. , Application of SNPs for population genetics
+ of nonmodel organisms: new opportunities and challenges. <span
+ style="font-style: italic;">Molecular Ecology Resources</span>,
+ no. doi: 10.1111/j.1755-0998.2010.02943.x<br>
</p>
[TRUNCATED]
To get the complete diff run:
svnlook diff /svnroot/adegenet -r 1011
More information about the adegenet-commits
mailing list