[Wavetiling-commits] r27 - in pkg: . inst

[noreply at r-forge.r-project.org]

Author: kdbeuf
Date: 2012-03-09 10:48:12 +0100 (Fri, 09 Mar 2012)
New Revision: 27

Modified:
   pkg/DESCRIPTION
   pkg/NAMESPACE
   pkg/inst/NEWS.Rd
Log:


Modified: pkg/DESCRIPTION
===================================================================
--- pkg/DESCRIPTION	2012-03-09 09:32:02 UTC (rev 26)
+++ pkg/DESCRIPTION	2012-03-09 09:48:12 UTC (rev 27)
@@ -5,9 +5,9 @@
 Title: Wavelet-Based Models for Tiling Array Transcriptome Analysis
 Author: Kristof De Beuf <kristof.debeuf at UGent.be>, Peter Pipelers <peter.pipelers at ugent.be> and Lieven Clement <lieven.clement at gmail.com>
 Maintainer: Kristof De Beuf <kristof.debeuf at UGent.be>
-Depends: oligo, oligoClasses, Biobase, GenomeGraphs, IRanges, Biostrings, GenomicRanges, waveslim, BSgenome
-Imports: methods, affy, preprocessCore
-Suggests:
+Depends: oligo, oligoClasses, Biobase, Biostrings
+Imports: methods, affy, preprocessCore, GenomicRanges, waveslim, GenomeGraphs, IRanges
+Suggests: BSgenome
 Description: This package is designed to conduct transcriptome analysis for tiling arrays based on fast wavelet-based functional models.
 Collate: allClasses.R allGenerics.R helperFunctions.R
         initialize-methods.R methods-MapFilterProbe.R

Modified: pkg/NAMESPACE
===================================================================
--- pkg/NAMESPACE	2012-03-09 09:32:02 UTC (rev 26)
+++ pkg/NAMESPACE	2012-03-09 09:48:12 UTC (rev 27)
@@ -43,14 +43,12 @@
 
 importFrom(methods, "@<-", callNextMethod, new)
 
-importFrom(oligo, read.celfiles)
+importFrom(waveslim, wave.filter, dwt, idwt)
 
-importFrom(preprocessCore, normalize.quantiles)
-
 importFrom(stats, contr.helmert, contr.treatment, lm, pnorm, qnorm,
            rnorm)
 
-importFrom(waveslim, wave.filter)
+## importFrom(waveslim, wave.filter)
 
 ## Plot
 importFrom(graphics, plot)

Modified: pkg/inst/NEWS.Rd
===================================================================
--- pkg/inst/NEWS.Rd	2012-03-09 09:32:02 UTC (rev 26)
+++ pkg/inst/NEWS.Rd	2012-03-09 09:48:12 UTC (rev 27)
@@ -3,8 +3,8 @@
 
 \section{Changes in version x.y}{
   \subsection{NEW FEATURES}{
-    \begin{itemize}
+    \itemize{
       \item ...;
-    \end{itemize}
+    }
   }
 }