[Vennerable-commits] r62 - in pkg/Vennerable: R inst/doc

noreply at r-forge.r-project.org noreply at r-forge.r-project.org
Sun Sep 27 17:52:53 CEST 2009


Author: js229
Date: 2009-09-27 17:52:50 +0200 (Sun, 27 Sep 2009)
New Revision: 62

Modified:
   pkg/Vennerable/R/02TissueDrawing.R
   pkg/Vennerable/inst/doc/Venn.Rnw
   pkg/Vennerable/inst/doc/Venn.pdf
Log:
make midline centroids default for two-sectors

Modified: pkg/Vennerable/R/02TissueDrawing.R
===================================================================
--- pkg/Vennerable/R/02TissueDrawing.R	2009-09-26 20:15:07 UTC (rev 61)
+++ pkg/Vennerable/R/02TissueDrawing.R	2009-09-27 15:52:50 UTC (rev 62)
@@ -1005,7 +1005,9 @@
 
 .face.centroid <- function(drawing,faceName) {
 	all.xy <- .face.toxy(drawing,faceName)
-	.polygon.centroid(all.xy)
+	res <- .polygon.centroid(all.xy)
+	names(res) <- "centroid"
+	res
 }
 
 .PlotFace.TissueDrawing <- function(drawing,faceName,dx=0.05,gp=gpar(),doDarkMatter=FALSE) {
@@ -1088,44 +1090,31 @@
 		drawing <- renameFaces(drawing,"DarkMatter",faceName)
 		# has the effect of treating as an ordinary face
 	}
-	faceCentroid <- .face.centroid(drawing,faceName=faceName);
-	rownames(faceCentroid)<-"centroid"
-	if (.is.point.within.face(drawing,faceName,faceCentroid)) {
-		return(faceCentroid)
+	edgeClasses <- .faceEdgeClasses(drawing,faceName)
+	if (all(edgeClasses=="VDedgeSector") & length(edgeClasses)==2) {
+		aPoint <- 	.face.midplace(drawing,faceName)
+		if (.is.point.within.face(drawing,faceName,aPoint )) {
+			return(aPoint )
+		} else {
+			aPoint <- .face.centroid(drawing,faceName=faceName)
+			if (.is.point.within.face(drawing,faceName,aPoint )) {
+				return(aPoint )
+			}
+		} 
+	} else { #otherwise test in other order
+		aPoint <- 	.face.centroid(drawing,faceName=faceName)
+		if (.is.point.within.face(drawing,faceName,aPoint )) {
+			return(aPoint )
+		} else {
+			aPoint <- .face.midplace(drawing,faceName=faceName);
+			if (.is.point.within.face(drawing,faceName,aPoint )) {
+				return(aPoint )
+			}
+		} 
 	}
-#browser()
-	# hmm. try the midpoint of each edge and form the centroid of those
-	# will be exactly what we want for two intersceting circle sectors
-	aPoint <- 	.face.midplace(drawing,faceName)
-	if (.is.point.within.face(drawing,faceName,aPoint )) {
-		return(aPoint )
-	}
 
+	# ok, just try and find some corner guaranteed to be inside
 
-	if (FALSE) { # old method 
-	# find a point on the edge which is ideally not a node
-	amidpoint <- .find.point.on.face(drawing,faceName)
-
-	# create a line from the centroid to past that point, and call it a chord
-	chord.from.xy <- faceCentroid 
-	grad <- faceCentroid-amidpoint; grad <- grad/sqrt(sum(grad^2))
-	maxradius <- .face.maxradius(drawing,faceName)
-	chord.to.xy <- amidpoint- maxradius*grad
-
-	npoints <- .probe.chord.intersections(drawing,faceName,chord.from.xy,chord.to.xy)
-
-	cix <- which(rownames(npoints)=="centroid")	
-	if (cix-2 > 0) {
-		q1 <- npoints[cix-2,,drop=FALSE];
-		q2 <- npoints[cix-1,,drop=FALSE]
-	} else if (cix+2 <= nrow(npoints) ){
-		q1 <- npoints[cix+1,,drop=FALSE];
-		q2 <- npoints[cix+2,,drop=FALSE]
-	} else{ stop(sprintf("Error in finding a point in face %s",faceName))}
-	qmid <- (q1+q2)/2
-	rownames(qmid) <- faceName
-		return(qmid)
-	} # old method
 	ear.triangle <- .find.triangle.within.face(drawing,faceName)
 	earCentroid <- .polygon.centroid(ear.triangle)
 	if (!	.is.point.within.face(drawing,faceName,earCentroid )) {

Modified: pkg/Vennerable/inst/doc/Venn.Rnw
===================================================================
--- pkg/Vennerable/inst/doc/Venn.Rnw	2009-09-26 20:15:07 UTC (rev 61)
+++ pkg/Vennerable/inst/doc/Venn.Rnw	2009-09-27 15:52:50 UTC (rev 62)
@@ -189,7 +189,7 @@
 
 
 \begin{figure}[H]\begin{center}
-<<pwabVmonth3,echo=TRUE,fig=TRUE>>=
+<<pwabVmonth3x2,echo=TRUE,fig=TRUE>>=
 grid.newpage()
 SetLabels <- VennGetSetLabels(C3)
 SetLabels[SetLabels$Label=="February","y"] <- SetLabels[SetLabels$Label=="March","y"]
@@ -478,7 +478,7 @@
 
 
 \begin{figure}[H]\begin{center}
-<<S47battle,fig=TRUE,echo=TRUE,eval=FALSE>>=
+<<S47battle,fig=TRUE,echo=TRUE,eval=TRUE>>=
 plot(Venn(n=9),type="battle",show=list(SetLabels=FALSE,FaceText=""))
 @
 \caption{The battlement variant of the Edwards construction on 9 sets with the \texttt{type=battle} argument}
@@ -560,12 +560,6 @@
 separated by these (possibly modified) distances.
 
 
-<<Vdemo,echo=FALSE,eval=FALSE>>=
-V3 <- Venn(SetNames=month.name[1:3])
-Weights(V3) <- c(0,81,81,9,81,9,9,1)
-@
-
-
 \newpage
 
 \subsubsection{Squares}

Modified: pkg/Vennerable/inst/doc/Venn.pdf
===================================================================
--- pkg/Vennerable/inst/doc/Venn.pdf	2009-09-26 20:15:07 UTC (rev 61)
+++ pkg/Vennerable/inst/doc/Venn.pdf	2009-09-27 15:52:50 UTC (rev 62)
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[TRUNCATED]

To get the complete diff run:
    svnlook diff /svnroot/vennerable -r 62


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