[Vennerable-commits] r62 - in pkg/Vennerable: R inst/doc
noreply at r-forge.r-project.org
noreply at r-forge.r-project.org
Sun Sep 27 17:52:53 CEST 2009
Author: js229
Date: 2009-09-27 17:52:50 +0200 (Sun, 27 Sep 2009)
New Revision: 62
Modified:
pkg/Vennerable/R/02TissueDrawing.R
pkg/Vennerable/inst/doc/Venn.Rnw
pkg/Vennerable/inst/doc/Venn.pdf
Log:
make midline centroids default for two-sectors
Modified: pkg/Vennerable/R/02TissueDrawing.R
===================================================================
--- pkg/Vennerable/R/02TissueDrawing.R 2009-09-26 20:15:07 UTC (rev 61)
+++ pkg/Vennerable/R/02TissueDrawing.R 2009-09-27 15:52:50 UTC (rev 62)
@@ -1005,7 +1005,9 @@
.face.centroid <- function(drawing,faceName) {
all.xy <- .face.toxy(drawing,faceName)
- .polygon.centroid(all.xy)
+ res <- .polygon.centroid(all.xy)
+ names(res) <- "centroid"
+ res
}
.PlotFace.TissueDrawing <- function(drawing,faceName,dx=0.05,gp=gpar(),doDarkMatter=FALSE) {
@@ -1088,44 +1090,31 @@
drawing <- renameFaces(drawing,"DarkMatter",faceName)
# has the effect of treating as an ordinary face
}
- faceCentroid <- .face.centroid(drawing,faceName=faceName);
- rownames(faceCentroid)<-"centroid"
- if (.is.point.within.face(drawing,faceName,faceCentroid)) {
- return(faceCentroid)
+ edgeClasses <- .faceEdgeClasses(drawing,faceName)
+ if (all(edgeClasses=="VDedgeSector") & length(edgeClasses)==2) {
+ aPoint <- .face.midplace(drawing,faceName)
+ if (.is.point.within.face(drawing,faceName,aPoint )) {
+ return(aPoint )
+ } else {
+ aPoint <- .face.centroid(drawing,faceName=faceName)
+ if (.is.point.within.face(drawing,faceName,aPoint )) {
+ return(aPoint )
+ }
+ }
+ } else { #otherwise test in other order
+ aPoint <- .face.centroid(drawing,faceName=faceName)
+ if (.is.point.within.face(drawing,faceName,aPoint )) {
+ return(aPoint )
+ } else {
+ aPoint <- .face.midplace(drawing,faceName=faceName);
+ if (.is.point.within.face(drawing,faceName,aPoint )) {
+ return(aPoint )
+ }
+ }
}
-#browser()
- # hmm. try the midpoint of each edge and form the centroid of those
- # will be exactly what we want for two intersceting circle sectors
- aPoint <- .face.midplace(drawing,faceName)
- if (.is.point.within.face(drawing,faceName,aPoint )) {
- return(aPoint )
- }
+ # ok, just try and find some corner guaranteed to be inside
- if (FALSE) { # old method
- # find a point on the edge which is ideally not a node
- amidpoint <- .find.point.on.face(drawing,faceName)
-
- # create a line from the centroid to past that point, and call it a chord
- chord.from.xy <- faceCentroid
- grad <- faceCentroid-amidpoint; grad <- grad/sqrt(sum(grad^2))
- maxradius <- .face.maxradius(drawing,faceName)
- chord.to.xy <- amidpoint- maxradius*grad
-
- npoints <- .probe.chord.intersections(drawing,faceName,chord.from.xy,chord.to.xy)
-
- cix <- which(rownames(npoints)=="centroid")
- if (cix-2 > 0) {
- q1 <- npoints[cix-2,,drop=FALSE];
- q2 <- npoints[cix-1,,drop=FALSE]
- } else if (cix+2 <= nrow(npoints) ){
- q1 <- npoints[cix+1,,drop=FALSE];
- q2 <- npoints[cix+2,,drop=FALSE]
- } else{ stop(sprintf("Error in finding a point in face %s",faceName))}
- qmid <- (q1+q2)/2
- rownames(qmid) <- faceName
- return(qmid)
- } # old method
ear.triangle <- .find.triangle.within.face(drawing,faceName)
earCentroid <- .polygon.centroid(ear.triangle)
if (! .is.point.within.face(drawing,faceName,earCentroid )) {
Modified: pkg/Vennerable/inst/doc/Venn.Rnw
===================================================================
--- pkg/Vennerable/inst/doc/Venn.Rnw 2009-09-26 20:15:07 UTC (rev 61)
+++ pkg/Vennerable/inst/doc/Venn.Rnw 2009-09-27 15:52:50 UTC (rev 62)
@@ -189,7 +189,7 @@
\begin{figure}[H]\begin{center}
-<<pwabVmonth3,echo=TRUE,fig=TRUE>>=
+<<pwabVmonth3x2,echo=TRUE,fig=TRUE>>=
grid.newpage()
SetLabels <- VennGetSetLabels(C3)
SetLabels[SetLabels$Label=="February","y"] <- SetLabels[SetLabels$Label=="March","y"]
@@ -478,7 +478,7 @@
\begin{figure}[H]\begin{center}
-<<S47battle,fig=TRUE,echo=TRUE,eval=FALSE>>=
+<<S47battle,fig=TRUE,echo=TRUE,eval=TRUE>>=
plot(Venn(n=9),type="battle",show=list(SetLabels=FALSE,FaceText=""))
@
\caption{The battlement variant of the Edwards construction on 9 sets with the \texttt{type=battle} argument}
@@ -560,12 +560,6 @@
separated by these (possibly modified) distances.
-<<Vdemo,echo=FALSE,eval=FALSE>>=
-V3 <- Venn(SetNames=month.name[1:3])
-Weights(V3) <- c(0,81,81,9,81,9,9,1)
-@
-
-
\newpage
\subsubsection{Squares}
Modified: pkg/Vennerable/inst/doc/Venn.pdf
===================================================================
--- pkg/Vennerable/inst/doc/Venn.pdf 2009-09-26 20:15:07 UTC (rev 61)
+++ pkg/Vennerable/inst/doc/Venn.pdf 2009-09-27 15:52:50 UTC (rev 62)
@@ -31,42 +31,191 @@
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[TRUNCATED]
To get the complete diff run:
svnlook diff /svnroot/vennerable -r 62
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