[Vennerable-commits] r69 - pkg/Vennerable/inst/doc
noreply at r-forge.r-project.org
noreply at r-forge.r-project.org
Thu Oct 8 15:08:21 CEST 2009
Author: js229
Date: 2009-10-08 15:08:18 +0200 (Thu, 08 Oct 2009)
New Revision: 69
Modified:
pkg/Vennerable/inst/doc/Euler3Sets.Rnw
pkg/Vennerable/inst/doc/TissueDrawingTest.Rnw
pkg/Vennerable/inst/doc/TissueDrawingTest.pdf
Log:
Modified: pkg/Vennerable/inst/doc/Euler3Sets.Rnw
===================================================================
--- pkg/Vennerable/inst/doc/Euler3Sets.Rnw 2009-10-01 21:16:27 UTC (rev 68)
+++ pkg/Vennerable/inst/doc/Euler3Sets.Rnw 2009-10-08 13:08:18 UTC (rev 69)
@@ -113,6 +113,22 @@
print(xtable(Ehave,digits=0),size="small"
)
@
+
+<<>>=
+E3List <- lapply(Ehave$VS,function(VS){
+ Weights <- t(Ehave[Ehave$VS==VS,2:8])[,1]
+ Weights["000"] <- 0
+ Weights <- Weights[order(names(Weights))]
+ Weights
+})
+names(E3List) <- Ehave$VS
+
+
+V <- Venn(Weight=E3List[["0000001"]],SetNames=LETTERS[1:3])
+C3 <- try(compute.Venn(V))
+}
+@
+
\cite{edwards:2004}
\bibliographystyle{plain}
\bibliography{./Venn}
Modified: pkg/Vennerable/inst/doc/TissueDrawingTest.Rnw
===================================================================
--- pkg/Vennerable/inst/doc/TissueDrawingTest.Rnw 2009-10-01 21:16:27 UTC (rev 68)
+++ pkg/Vennerable/inst/doc/TissueDrawingTest.Rnw 2009-10-08 13:08:18 UTC (rev 69)
@@ -72,8 +72,9 @@
Most edges form the boundaries of both Faces and Sets. The exception is invisible edges which are added between otherwise disjoint sets
to ensure the diagram is not disjoint.
+Edges have bounding boxes in the \texttt{\@bb} slot, although I am not sure if these are always correctly updated upon the joining
+or splitting of edges.
-
\subsection{The VDedgeSector object}
A \texttt{VDedgeSector} object inherits from a \texttt{VDedgeDrawn} one.
A sector is a segment of a circle, defined by two points,
@@ -155,8 +156,15 @@
\end{center}\end{figure}
\section{Joining disjoint faces}
+<<>>=
+.PlotArcs <- function(drawing,edgeNames) {
+ if (missing(edgeNames)) { edgeNames=names(drawing at edgeList)}
+ exy <- lapply(drawing at edgeList[edgeNames],.edge.to.xy)
+ lapply(exy,function(xy){grid.lines(xy[,1],xy[,2],arrow=arrow(),default.units="native")})
+ }
-<<defjoint>>=
+
+<<defjoint,fig=TRUE>>=
VD2 <- compute.Venn(Venn(n=2))
VD3 <- newTissueFromCircle (centre.xy =c(2,0), radius=.6,Set=3)
VD23 <- VD2
@@ -166,11 +174,11 @@
grid.newpage()
pushViewport(plotViewport(c(1,1,1,1)))
makevp.eqsc(c(-2,3),c(-2,2));grid.xaxis();grid.yaxis()
-PlotSetBoundaries(VD23)
-drawing <- VD23
-innerFaceName <- "1"
-.create.edge.joining.faces(drawing,"DarkMatter","1")
+cejf <- .create.edge.joining.faces(VD23,"DarkMatter","1")
+VD23 <- cejf$drawing
+PlotSetBoundaries(VD23)
+.PlotArcs(VD23)
@
\section{The TissueDrawing object}
@@ -237,59 +245,8 @@
\caption{Constructing TissueDrawing objects from scratch}
\end{center}\end{figure}
-\subsection{Ellipses}
-Ellipses could be coped with specially by finding roots of quartics,
-but don't bother and just generate them as polygons
-<<dve>>=
-VE <- newTissueFromEllipse (f1=c(0,0),phi=pi/4,e=.5,a=0.5,Set=1)
-.validateDrawing(VE)
-@
-\begin{figure}[H]\begin{center}
-<<shoVE1,fig=TRUE>>=
-grid.newpage();pushViewport(plotViewport(c(1,1,1,1)))
-makevp.eqsc(c(-2,2),c(-2,2))
-grid.xaxis()
-grid.yaxis()
-PlotFaces(VE)
-PlotSetBoundaries(VE,gp=gpar(lwd=2,col=c("red","blue","green")))
-PlotNodes(VE)
-@
- \end{center}\end{figure}
-<<dve4>>=
- phi <- 0.8; dex <- 1.7;dey <- 2.5; a<- 7.6; e<- 0.9
- x0 <- c( -0.9, -5.0)
- VE <- list()
- dx <- 0.2
- VE[[1]] <- newTissueFromEllipse (x0+c(0,0),-phi ,e,-a,Set=1,dx=dx)
- VE[[2]] <- newTissueFromEllipse (x0+c(dex,0),phi ,e,a,Set=2,dx=dx)
- VE[[3]] <- newTissueFromEllipse (x0+c(-dey,dey),-phi ,e,-a,Set=3,dx=dx)
- VE[[4]] <- newTissueFromEllipse (x0+c(dex+dey,dey),phi ,e,a,Set=4,dx=dx)
-
- TM <- VE[[1]]
- TM2 <- addSetToDrawing(TM,VE[[2]],set2Name=paste("Set",2,sep=""))
- TM3 <- addSetToDrawing(TM2,VE[[3]],set2Name=paste("Set",3,sep=""))
- TM4 <- addSetToDrawing(TM3,VE[[4]],set2Name=paste("Set",4,sep=""))
-.validateDrawing(TM4)
-@
-\begin{figure}[H]\begin{center}
-<<shoVE4,fig=TRUE>>=
-grid.newpage();pushViewport(plotViewport(c(1,1,1,1)))
-makevp.eqsc(c(-10,10),c(-8,10))
-grid.xaxis()
-grid.yaxis()
-PlotFaces(TM4 )
-PlotSetBoundaries(TM4 ,gp=gpar(lwd=2,col=c("red","blue","green","yellow")))
-.PlotFaceNames.TissueDrawing (TM4)
-@
-
-\caption{Constructing TissueDrawing objects from scratch}
- \end{center}\end{figure}
-
-
-
-
\section{Injecting points and edges}
We test injecting points
@@ -305,20 +262,6 @@
VD4
@
-\begin{figure}[H]\begin{center}
-<<shoVD4bz,fig=TRUE>>=
-grid.newpage();pushViewport(plotViewport(c(1,1,1,1)))
-makevp.eqsc(c(-7,7),c(-5,10))
-grid.xaxis()
-grid.yaxis()
-
-PlotFaces(VD4)
-PlotSetBoundaries(VD4,gp=gpar(lwd=2,col=c("red","blue","green")))
-PlotNodes(VD4)
-@
-\caption{Injecting points}
- \end{center}\end{figure}
-
Then we try injecting single edges
<<defp1p4>>=
@@ -342,22 +285,7 @@
VD6
@
-\begin{figure}[H]\begin{center}
-<<shoVD6b,fig=TRUE>>=
-grid.newpage();pushViewport(plotViewport(c(1,1,1,1)))
-makevp.eqsc(c(-7,7),c(-5,10))
-grid.xaxis()
-grid.yaxis()
-PlotFaces(VD6)
-PlotSetBoundaries(VD6,gp=gpar(lwd=2,col=c("red","blue","green","black")))
-.PlotFaceNames.TissueDrawing (VD6)
-PlotNodes(VD6)
-#.PlotArcs(VD,c("p1|p5|1","p2|p4|2"),arrow=arrow())
-@
- \end{center}\end{figure}
-And now injecting edges of multiple points
-
<<elistm>>=
VD8 <- VD6
p7 <- matrix(c(-2,1),ncol=2); rownames(p7) <- "p7";
@@ -506,7 +434,46 @@
+\subsection{Ellipses}
+Ellipses could be coped with specially by finding roots of quartics,
+but don't bother and just generate them as polygons
+<<dve>>=
+VE <- newTissueFromEllipse (f1=c(0,0),phi=pi/4,e=.5,a=0.5,Set=1)
+.validateDrawing(VE)
+@
+\begin{figure}[H]\begin{center}
+<<shoVE1,fig=TRUE>>=
+grid.newpage();pushViewport(plotViewport(c(1,1,1,1)))
+makevp.eqsc(c(-2,2),c(-2,2))
+grid.xaxis()
+grid.yaxis()
+PlotFaces(VE)
+PlotSetBoundaries(VE,gp=gpar(lwd=2,col=c("red","blue","green")))
+PlotNodes(VE)
+@
+ \end{center}\end{figure}
+
+<<dve4>>=
+ phi <- 0.8; dex <- 1.7;dey <- 2.5; a<- 7.6; e<- 0.9
+ x0 <- c( -0.9, -5.0)
+ VE <- list()
+ dx <- 0.2
+ VE[[1]] <- newTissueFromEllipse (x0+c(0,0),-phi ,e,-a,Set=1,dx=dx)
+ VE[[2]] <- newTissueFromEllipse (x0+c(dex,0),phi ,e,a,Set=2,dx=dx)
+ VE[[3]] <- newTissueFromEllipse (x0+c(-dey,dey),-phi ,e,-a,Set=3,dx=dx)
+ VE[[4]] <- newTissueFromEllipse (x0+c(dex+dey,dey),phi ,e,a,Set=4,dx=dx)
+
+ TM <- VE[[1]]
+ TM2 <- addSetToDrawing(TM,VE[[2]],set2Name=paste("Set",2,sep=""))
+ TM3 <- addSetToDrawing(TM2,VE[[3]],set2Name=paste("Set",3,sep=""))
+ TM4 <- addSetToDrawing(TM3,VE[[4]],set2Name=paste("Set",4,sep=""))
+.validateDrawing(TM4)
+@
+
+
+
+
\section{Check for the intersection of two edges}
<<isect>>=
Modified: pkg/Vennerable/inst/doc/TissueDrawingTest.pdf
===================================================================
--- pkg/Vennerable/inst/doc/TissueDrawingTest.pdf 2009-10-01 21:16:27 UTC (rev 68)
+++ pkg/Vennerable/inst/doc/TissueDrawingTest.pdf 2009-10-08 13:08:18 UTC (rev 69)
@@ -163,80 +163,333 @@
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[TRUNCATED]
To get the complete diff run:
svnlook diff /svnroot/vennerable -r 69
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