[Vegan-commits] r2976 - pkg/vegan/inst

[noreply at r-forge.r-project.org]

Author: jarioksa
Date: 2015-11-13 13:05:33 +0100 (Fri, 13 Nov 2015)
New Revision: 2976

Modified:
   pkg/vegan/inst/NEWS.Rd
Log:
Squashed commit of the following:

commit 7024df2c2de9e54c23c97dc91b87b6d9b750b2b1
Author: Jari Oksanen <jari.oksanen at oulu.fi>
Date:   Fri Nov 13 11:50:12 2015 +0200

    stop

commit 05da200d6df320d37e9ccf93b33f12004e1394ef
Author: Jari Oksanen <jari.oksanen at oulu.fi>
Date:   Fri Nov 13 11:44:15 2015 +0200

    add ref to issue #144 in NEWS

commit 899bdb761317144fe616b00490111b6d8d4d1cf5
Author: Jari Oksanen <jari.oksanen at oulu.fi>
Date:   Fri Nov 13 11:30:48 2015 +0200

    we probably have 2.3-2: write NEWS

commit 8587c83f846a91221a6cc9d24a533029e18425a0
Author: Gavin L. Simpson <ucfagls at gmail.com>
Date:   Thu Nov 12 16:09:43 2015 -0600

    fix a bug in determining the numbers of rows and columns in a within-plot grid design

    (cherry picked from commit 2fa990a8e23cfb0c56800155dac9c99127745218)

Modified: pkg/vegan/inst/NEWS.Rd
===================================================================
--- pkg/vegan/inst/NEWS.Rd	2015-11-13 09:32:55 UTC (rev 2975)
+++ pkg/vegan/inst/NEWS.Rd	2015-11-13 12:05:33 UTC (rev 2976)
@@ -2,6 +2,43 @@
 \title{vegan News}
 \encoding{UTF-8}
 
+\section{Changes in version 2.3-2}{
+
+  \subsection{BUG FIXES}{
+    \itemize{
+
+      \item Display of gridded permutation results failed.
+
+      \item \code{ordicluster} joined the branches at wrong coordinates
+      in some cases.
+
+      \item \code{ordiellipse} ignored weights when calculating standard
+      errors (\code{kind = "se"}). This influenced plots of \code{cca},
+      and also influenced \code{ordiareatest}.
+
+    } % itemize
+  } % bug fixes
+
+  \subsection{NEW FEATURES}{
+    \itemize{
+
+      \item \code{text}, \code{points} and \code{lines} functions for
+      \code{procrustes} analysis gained new argument \code{truemean}
+      which allows adding \code{procrustes} items to the plots of
+      original analysis.
+
+      \item \code{rrarefy} returns observed non-rarefied communities
+      (with a warning) when users request subsamples that are larger
+      than the observed community instead of failing. Function
+      \code{drarefy} has been similar and returned sampling
+      probabilities of 1, but now it also issues a warning. Fixes issue
+      \href{https://github.com/vegandevs/vegan/issues/144}{#144} in
+      Github.
+
+    } % itemize
+  } % new features
+} %v2.3-2
+
 \section{Changes in version 2.3-1}{
 
   \subsection{BUG FIXES}{