[Vegan-commits] r2930 - in pkg/vegan: R man

[noreply at r-forge.r-project.org]

Author: jarioksa
Date: 2015-01-27 13:26:14 +0100 (Tue, 27 Jan 2015)
New Revision: 2930

Modified:
   pkg/vegan/R/cascadeKM.R
   pkg/vegan/man/cascadeKM.Rd
   pkg/vegan/man/cca.Rd
   pkg/vegan/man/sipoo.Rd
Log:
Merge branch 'cran-2.2' into r-forge-svn-local

Modified: pkg/vegan/R/cascadeKM.R
===================================================================
--- pkg/vegan/R/cascadeKM.R	2015-01-22 12:10:05 UTC (rev 2929)
+++ pkg/vegan/R/cascadeKM.R	2015-01-27 12:26:14 UTC (rev 2930)
@@ -47,9 +47,6 @@
     h <- 1
     for(ii in inf.gr:sup.gr)
     {
-        ## Initialization
-        ## set.seed(ii)  
-        ## Set.seed ˆ ŽtŽ enlevŽ car il rend instable la fonction kmeans
         j <- ii - inf.gr + 1
         tmp <- kmeans(data, ii, iter.max = 50, nstart=iter)
         size[1:ii,h] <- tmp$size

Modified: pkg/vegan/man/cascadeKM.Rd
===================================================================
--- pkg/vegan/man/cascadeKM.Rd	2015-01-22 12:10:05 UTC (rev 2929)
+++ pkg/vegan/man/cascadeKM.Rd	2015-01-27 12:26:14 UTC (rev 2930)
@@ -145,7 +145,7 @@
 \references{
 
   Calinski, T. and J. Harabasz. 1974. A dendrite method for cluster
-  analysis. \emph{Commun. Stat.} \strong{3}: 1-27.
+  analysis. \emph{Commun. Stat.} \strong{3}: 1--27.
 
   Dolnicar, S., K. Grabler and J. A. Mazanec. 1999.  A tale of three
   cities: perceptual charting for analyzing destination images. Pp.
@@ -155,18 +155,18 @@
   
   Gower, J. C. 1966. Some distance properties of latent root and vector
   methods used in multivariate analysis. \emph{Biometrika} \strong{53}:
-  325-338.
+  325--338.
   
   Legendre, P. & L. Legendre. 2012. \emph{Numerical ecology}, 3rd
   English edition. Elsevier Science BV, Amsterdam.
   
   Milligan, G. W. & M. C. Cooper. 1985. An examination of procedures for
   determining the number of clusters in a data set. \emph{Psychometrika}
-  \strong{50}: 159-179.
+  \strong{50}: 159--179.
 
-  Weingessel, A., Dimitriadou, A. and Dolnicar, S. \emph{An Examination
-  Of Indexes For Determining The Number Of Clusters In Binary Data
-  Sets}, \url{http://www.wu-wien.ac.at/am/wp99.htm#29}
+  Weingessel, A., Dimitriadou, A. and Dolnicar, S. 2002. An examination
+  of indexes for determining the number of clusters in binary data
+  sets. \emph{Psychometrika} \strong{67}: 137--160.
 }
 
 \author{ Marie-Helene Ouellette

Modified: pkg/vegan/man/cca.Rd
===================================================================
--- pkg/vegan/man/cca.Rd	2015-01-22 12:10:05 UTC (rev 2929)
+++ pkg/vegan/man/cca.Rd	2015-01-27 12:26:14 UTC (rev 2930)
@@ -190,7 +190,7 @@
 }
 \author{
   The responsible author was Jari Oksanen, but the code borrows heavily
-  from Dave Roberts (\url{http://labdsv.nr.usu.edu/}).
+  from Dave Roberts (Montana State University, USA).
 }
 
 \seealso{

Modified: pkg/vegan/man/sipoo.Rd
===================================================================
--- pkg/vegan/man/sipoo.Rd	2015-01-22 12:10:05 UTC (rev 2929)
+++ pkg/vegan/man/sipoo.Rd	2015-01-27 12:26:14 UTC (rev 2930)
@@ -15,10 +15,8 @@
   these unique). The example gives the areas of the studies islands in
   hectares. 
 }
+
 \source{
-\url{http://www.aics-research.com/nested/}
-}
-\references{
 Simberloff, D. & Martin, J.-L.  (1991). 
 Nestedness of insular avifaunas:
 simple summary statistics masking