[Vegan-commits] r2944 - in pkg/vegan: R man

[noreply at r-forge.r-project.org]

Author: jarioksa
Date: 2015-04-17 09:30:18 +0200 (Fri, 17 Apr 2015)
New Revision: 2944

Modified:
   pkg/vegan/R/print.oecosimu.R
   pkg/vegan/man/oecosimu.Rd
Log:
Merge branch 'cran-2.2' into r-forge-svn-local

Modified: pkg/vegan/R/print.oecosimu.R
===================================================================
--- pkg/vegan/R/print.oecosimu.R	2015-03-24 08:53:00 UTC (rev 2943)
+++ pkg/vegan/R/print.oecosimu.R	2015-04-17 07:30:18 UTC (rev 2944)
@@ -32,7 +32,7 @@
                     less = c(0.05, 0.5))
     qu <- apply(x$oecosimu$simulated, 1, quantile, probs=probs, na.rm = TRUE)
     m <- cbind("statistic" = x$oecosimu$statistic,
-               "z" = x$oecosimu$z, "mean" = x$oecosimu$means, t(qu),
+               "SES" = x$oecosimu$z, "mean" = x$oecosimu$means, t(qu),
                "Pr(sim.)"=x$oecosimu$pval)
     printCoefmat(m, cs.ind = 3:(ncol(m)-1), ...)
     if (any(is.na(x$oecosimu$simulated))) {

Modified: pkg/vegan/man/oecosimu.Rd
===================================================================
--- pkg/vegan/man/oecosimu.Rd	2015-03-24 08:53:00 UTC (rev 2943)
+++ pkg/vegan/man/oecosimu.Rd	2015-04-17 07:30:18 UTC (rev 2944)
@@ -177,8 +177,8 @@
   \item{statistic}{Observed values of the statistic.}
   \item{simulated}{Simulated values of the statistic.}
   \item{means}{Mean values of the statistic from simulations.}
-  \item{z}{\eqn{z}-values or the standardized effect sizes of the observed 
-     statistic based on simulations.}
+  \item{z}{Standardized effect sizes (SES, a.k.a. the \eqn{z}-values)
+     of the observed statistic based on simulations.}
   \item{pval}{The \eqn{P}-values of the statistic based on simulations.}
   \item{alternative}{The type of testing as given in argument \code{alternative}.}
   \item{method}{The \code{method} used in \code{\link{nullmodel}}.}