[Vegan-commits] r2746 - pkg/vegan/inst

[noreply at r-forge.r-project.org]

Author: gsimpson
Date: 2013-11-22 19:00:34 +0100 (Fri, 22 Nov 2013)
New Revision: 2746

Modified:
   pkg/vegan/inst/ChangeLog
Log:
document r2744 and r2745

Modified: pkg/vegan/inst/ChangeLog
===================================================================
--- pkg/vegan/inst/ChangeLog	2013-11-22 17:59:51 UTC (rev 2745)
+++ pkg/vegan/inst/ChangeLog	2013-11-22 18:00:34 UTC (rev 2746)
@@ -10,7 +10,7 @@
 	the function no more adapts the number of iterations for the
 	P-value, and arguments 'step' and 'perm.max' were removed.
 	Instead, permute package is used to create a permutation matrix
-	used in all cases with fixed number of permutations. 
+	used in all cases with fixed number of permutations.
 
 	In addition to the overall test, the function allows now testing
 	a sequence of models (anova.ccalist). Specific tests provided are
@@ -36,6 +36,11 @@
 	* oecosimu: change printed quantiles to match the direction of the
 	test as changed in r2495.
 
+	* permutest.betadisper: updated to the new permute API and operates
+	similarly to permutest.cca in respect of how the permutation test
+	can be defined. It currently doesn't support the parallel processing
+	of the cca method, however.
+
 	* tests: vegan examples and vegan-tests have been out of sync for
 	a long time. These have not been updated because most of the
 	changes seem to be triggered by switching to R 3.0-x, and we have
@@ -44,7 +49,7 @@
 	results. In particular, there seem to be differences in
 	permutations, constrained ordination, in particular in capscale()
 	and rounding of output. We have also introduced some changes in
-	output that were not yet synced. 
+	output that were not yet synced.
 
 	* janitorial: vegan has been dependent on R >= 2.14.0 since
 	version 2.1-34 (r2597 Wed 28-Aug-2013). Now superfluous references
@@ -52,7 +57,9 @@
 	documentation. FIXME: cca() returns residuals.zombie item that was
 	supposed to be needed in R < 2.13.0. This was not yet removed: we
 	must first check that this can be safely done.
-	
+
+	vegan also now depends on permute version 0.7-8 or later.
+
 Version 2.1-38 (closed November 10, 2013)
 
 	* DESCRIPTION: depends on permute >= 0.7-5, where the