[Vegan-commits] r2177 - pkg/vegan/tests/Examples

[noreply at r-forge.r-project.org]

Author: jarioksa
Date: 2012-05-23 09:07:44 +0200 (Wed, 23 May 2012)
New Revision: 2177

Modified:
   pkg/vegan/tests/Examples/vegan-Ex.Rout.save
Log:
adapt tests to r2176

Modified: pkg/vegan/tests/Examples/vegan-Ex.Rout.save
===================================================================
--- pkg/vegan/tests/Examples/vegan-Ex.Rout.save	2012-05-22 20:55:21 UTC (rev 2176)
+++ pkg/vegan/tests/Examples/vegan-Ex.Rout.save	2012-05-23 07:07:44 UTC (rev 2177)
@@ -1,5 +1,5 @@
 
-R Under development (unstable) (2012-05-08 r59331) -- "Unsuffered Consequences"
+R Under development (unstable) (2012-05-22 r59410) -- "Unsuffered Consequences"
 Copyright (C) 2012 The R Foundation for Statistical Computing
 ISBN 3-900051-07-0
 Platform: x86_64-unknown-linux-gnu (64-bit)
@@ -161,7 +161,7 @@
 
 Formula:
 y ~ poly(x1, 1) + poly(x2, 1)
-<environment: 0x1ab8180>
+<environment: 0x38567e8>
 Total model degrees of freedom 3 
 
 GCV score: 0.0427924
@@ -4327,7 +4327,8 @@
 > ordicluster(mod, hclust(vegdist(dune)), prune=3, col = "blue")
 > plot(mod, type="n", display = "sites")
 > text(mod, display="sites", labels = as.character(Management))
-> pl <- ordiellipse(mod, Management, kind="se", conf=0.95, lwd=2, col="blue")
+> pl <- ordiellipse(mod, Management, kind="se", conf=0.95, lwd=2, draw = "polygon", 
++   col="skyblue", border = "blue")
 > summary(pl)
              BF         HF          NM         SF
 CCA1 -0.4312652 -0.5583211  1.87848340 -0.5601499
@@ -4779,7 +4780,7 @@
 
 Formula:
 y ~ s(x1, x2, k = knots)
-<environment: 0x8e96e18>
+<environment: 0xa720c90>
 
 Estimated degrees of freedom:
 6.4351  total = 7.43507 
@@ -4795,7 +4796,7 @@
 
 Formula:
 y ~ s(x1, x2, k = knots)
-<environment: 0x6842378>
+<environment: 0xa0b8058>
 
 Estimated degrees of freedom:
 6.1039  total = 7.103853 
@@ -4951,7 +4952,7 @@
 
 Formula:
 y ~ s(x1, x2, k = knots)
-<environment: 0x8058440>
+<environment: 0x9bbcd00>
 
 Estimated degrees of freedom:
 8.9275  total = 9.927492 
@@ -4964,7 +4965,7 @@
 
 Formula:
 y ~ s(x1, x2, k = knots)
-<environment: 0x932a9e0>
+<environment: 0xa7920a8>
 
 Estimated degrees of freedom:
 7.7529  total = 8.75294 
@@ -4977,7 +4978,7 @@
 
 Formula:
 y ~ s(x1, x2, k = knots)
-<environment: 0x8d6dac8>
+<environment: 0xb12a2c0>
 
 Estimated degrees of freedom:
 8.8962  total = 9.89616 
@@ -7516,7 +7517,7 @@
 
 Formula:
 y ~ s(x1, x2, k = knots)
-<environment: 0x9acc558>
+<environment: 0xb1c9470>
 
 Estimated degrees of freedom:
 2  total = 3 
@@ -7996,7 +7997,7 @@
 > ### * <FOOTER>
 > ###
 > cat("Time elapsed: ", proc.time() - get("ptime", pos = 'CheckExEnv'),"\n")
-Time elapsed:  26.809 0.12 27.044 0 0 
+Time elapsed:  26.445 0.216 26.972 0 0 
 > grDevices::dev.off()
 null device 
           1