[Vegan-commits] r2166 - pkg/vegan/tests/Examples

[noreply at r-forge.r-project.org]

Author: jarioksa
Date: 2012-05-11 09:50:28 +0200 (Fri, 11 May 2012)
New Revision: 2166

Modified:
   pkg/vegan/tests/Examples/vegan-Ex.Rout.save
Log:
update tests for r2164

Modified: pkg/vegan/tests/Examples/vegan-Ex.Rout.save
===================================================================
--- pkg/vegan/tests/Examples/vegan-Ex.Rout.save	2012-05-11 07:44:13 UTC (rev 2165)
+++ pkg/vegan/tests/Examples/vegan-Ex.Rout.save	2012-05-11 07:50:28 UTC (rev 2166)
@@ -23,7 +23,7 @@
 > options(warn = 1)
 > library('vegan')
 Loading required package: permute
-This is vegan 2.1-15
+This is vegan 2.1-16
 > 
 > assign(".oldSearch", search(), pos = 'CheckExEnv')
 > cleanEx()
@@ -161,7 +161,7 @@
 
 Formula:
 y ~ poly(x1, 1) + poly(x2, 1)
-<environment: 0x19711b8>
+<environment: 0x1ab8180>
 Total model degrees of freedom 3 
 
 GCV score: 0.0427924
@@ -4123,7 +4123,7 @@
 ‘swap’ method (binary, sequential)
 12 x 10 matrix
 Number of permuted matrices = 10 
-Start = 61, End = 110, Thin = 5
+Start = 1, End = 50, Thin = 5
 
 > 
 > ## sequential nullmodel with separate initial burnin
@@ -4133,7 +4133,7 @@
 12 x 10 matrix
 Iterations = 0 
 
-> update(nm, nsim=10)
+> nm <- update(nm, nsim=10)
 > (sm2 <- simulate(nm, nsim=10, thin=5))
 An object of class “simmat” 
 ‘swap’ method (binary, sequential)
@@ -4779,7 +4779,7 @@
 
 Formula:
 y ~ s(x1, x2, k = knots)
-<environment: 0x9012e08>
+<environment: 0x8e96e18>
 
 Estimated degrees of freedom:
 6.4351  total = 7.43507 
@@ -4795,7 +4795,7 @@
 
 Formula:
 y ~ s(x1, x2, k = knots)
-<environment: 0x88d2170>
+<environment: 0x6842378>
 
 Estimated degrees of freedom:
 6.1039  total = 7.103853 
@@ -4951,7 +4951,7 @@
 
 Formula:
 y ~ s(x1, x2, k = knots)
-<environment: 0x8445ce8>
+<environment: 0x8058440>
 
 Estimated degrees of freedom:
 8.9275  total = 9.927492 
@@ -4964,7 +4964,7 @@
 
 Formula:
 y ~ s(x1, x2, k = knots)
-<environment: 0x940a710>
+<environment: 0x932a9e0>
 
 Estimated degrees of freedom:
 7.7529  total = 8.75294 
@@ -4977,7 +4977,7 @@
 
 Formula:
 y ~ s(x1, x2, k = knots)
-<environment: 0x7eed968>
+<environment: 0x8d6dac8>
 
 Estimated degrees of freedom:
 8.8962  total = 9.89616 
@@ -7516,7 +7516,7 @@
 
 Formula:
 y ~ s(x1, x2, k = knots)
-<environment: 0x9eec7f0>
+<environment: 0x9acc558>
 
 Estimated degrees of freedom:
 2  total = 3 
@@ -7996,7 +7996,7 @@
 > ### * <FOOTER>
 > ###
 > cat("Time elapsed: ", proc.time() - get("ptime", pos = 'CheckExEnv'),"\n")
-Time elapsed:  25.813 0.164 26.07 0 0 
+Time elapsed:  26.809 0.12 27.044 0 0 
 > grDevices::dev.off()
 null device 
           1