[Vegan-commits] r2253 - in pkg/vegan: . inst

[noreply at r-forge.r-project.org]

Author: jarioksa
Date: 2012-08-20 08:16:34 +0200 (Mon, 20 Aug 2012)
New Revision: 2253

Modified:
   pkg/vegan/DESCRIPTION
   pkg/vegan/inst/ChangeLog
Log:
version up and ChangeLog on density methods

Modified: pkg/vegan/DESCRIPTION
===================================================================
--- pkg/vegan/DESCRIPTION	2012-08-20 05:57:24 UTC (rev 2252)
+++ pkg/vegan/DESCRIPTION	2012-08-20 06:16:34 UTC (rev 2253)
@@ -1,7 +1,7 @@
 Package: vegan
 Title: Community Ecology Package
-Version: 2.1-18
-Date: July 30, 2012
+Version: 2.1-19
+Date: August 20, 2012
 Author: Jari Oksanen, F. Guillaume Blanchet, Roeland Kindt, Pierre Legendre, 
    Peter R. Minchin, R. B. O'Hara, Gavin L. Simpson, Peter Solymos, 
    M. Henry H. Stevens, Helene Wagner  

Modified: pkg/vegan/inst/ChangeLog
===================================================================
--- pkg/vegan/inst/ChangeLog	2012-08-20 05:57:24 UTC (rev 2252)
+++ pkg/vegan/inst/ChangeLog	2012-08-20 06:16:34 UTC (rev 2253)
@@ -2,8 +2,29 @@
 
 VEGAN DEVEL VERSIONS at http://r-forge.r-project.org/
 
-Version 2.1-18 (opened July 30, 2012)
+Version 2.1-19 (opened August 20, 2012)
+ 
+	* density methods: all vegan functions that return simulated or
+	permuted statistics have now density() methods that directly
+	access the returned statistic. The functions can be used to plot
+	the empirical distribution of the statistics with
+	plot(density(<vegan-object>)). 
 
+	The density methods were made available for adonis, anosim,
+	mantel & partial.mantel, mrpp, permutest.cca and procrustes. The
+	anova.cca function does not return permutated statistics.
+
+	All density methods handle only one statistic. Function adonis()
+	can return a matrix of permuted F-values for each term, and it
+	gained a densityplot method (lattice package) that can handle all
+	these simultaneously.
+	
+	Functions adipart, hiersimu and multipart were made
+	oecosimu-compliant earlier and simultaneously they also gained the
+	density and densityplot methods.
+	
+Version 2.1-18 (closed August 20, 2012)
+
 	* cIndexKM: internal function count() triggered a warning in R CMD
 	check with R-devel because the funtion used .C() call to an
 	unloaded packages "cclust". count() was never called in the