[Vegan-commits] r1908 - pkg/vegan/tests
noreply at r-forge.r-project.org
noreply at r-forge.r-project.org
Wed Sep 28 17:38:06 CEST 2011
Author: jarioksa
Date: 2011-09-28 17:38:06 +0200 (Wed, 28 Sep 2011)
New Revision: 1908
Modified:
pkg/vegan/tests/oecosimu-tests.Rout.save
Log:
update for vegan at 1856 with r1907: the new baseline
Modified: pkg/vegan/tests/oecosimu-tests.Rout.save
===================================================================
--- pkg/vegan/tests/oecosimu-tests.Rout.save 2011-09-28 15:36:44 UTC (rev 1907)
+++ pkg/vegan/tests/oecosimu-tests.Rout.save 2011-09-28 15:38:06 UTC (rev 1908)
@@ -616,6 +616,7 @@
> for(mar in margin) {
+ for(what in shuffle) {
+ cat("\n--> margin", mar, " shuffle", what, "<--\n")
++ set.seed(4711)
+ m <- permatfull1(x, fixedmar = mar, shuffle = what, mtype = "count")
+ margintest(m, gsum, rsum, csum, fill, rfrq, cfrq)
+ print(m[,1:12])
@@ -677,586 +678,586 @@
--> margin none shuffle samp <--
grand sum: [1] TRUE
-row sums: [1] "Mean relative difference: 0.6269636"
-col sums: [1] "Mean relative difference: 1.136544"
+row sums: [1] "Mean relative difference: 0.6473947"
+col sums: [1] "Mean relative difference: 1.243225"
fill: [1] TRUE
-row freqs: [1] "Mean relative difference: 0.365812"
-col freqs: [1] "Mean relative difference: 0.6355786"
+row freqs: [1] "Mean relative difference: 0.3908451"
+col freqs: [1] "Mean relative difference: 0.6542373"
[,1] [,2] [,3] [,4] [,5] [,6] [,7] [,8] [,9] [,10] [,11] [,12]
- [1,] 5 0 0 0 0 0 0 0 14 0 3 11
- [2,] 18 2 2 22 0 0 0 0 4 0 1 0
- [3,] 2 0 0 4 0 0 0 0 2 1 0 0
- [4,] 0 16 0 0 0 1 0 0 0 0 2 0
- [5,] 0 8 0 0 5 2 0 9 1 0 25 0
- [6,] 5 1 0 3 0 0 2 4 0 0 0 1
- [7,] 0 1 0 7 4 0 0 0 0 0 2 5
- [8,] 0 12 0 2 0 0 0 0 0 0 0 0
- [9,] 0 5 0 3 0 0 0 0 0 0 0 0
-[10,] 0 2 15 4 0 2 5 4 9 33 0 0
-[11,] 2 0 6 1 0 7 0 3 8 0 0 0
-[12,] 0 0 2 1 2 5 20 4 0 1 0 0
-[13,] 0 3 0 0 0 44 0 1 0 1 57 0
-[14,] 6 1 0 0 6 0 0 0 0 0 3 0
-[15,] 0 0 1 0 0 0 0 15 0 1 0 3
-[16,] 0 20 723 2 0 9 0 0 7 20 1 0
-[17,] 24 1 0 2 0 0 0 0 0 0 0 5
-[18,] 1 0 0 1 2 0 0 2 0 1 1 0
-[19,] 0 1 0 0 0 0 0 1 2 0 1 0
-[20,] 5 2 2 0 2 4 0 0 1 1 0 0
-[21,] 0 0 0 0 0 0 32 0 0 0 11 0
-[22,] 0 0 4 0 0 0 0 0 1 0 0 0
-[23,] 1 25 0 0 0 0 0 0 6 0 0 0
-[24,] 0 0 0 0 0 0 0 0 24 31 15 1
-[25,] 2 8 1 2 2 0 2 0 0 1 0 0
-[26,] 5 2 4 0 2 2 0 1 0 0 0 0
-[27,] 0 19 0 0 26 2 0 38 2 0 9 5
-[28,] 0 20 0 0 0 0 0 0 7 0 0 0
-[29,] 0 5 0 5 0 1 2 11 0 0 0 0
-[30,] 0 20 0 1 1 44 2 1 0 0 0 9
-[31,] 0 0 0 0 0 0 0 0 0 2 0 1
-[32,] 20 0 0 24 21 0 0 6 0 3 0 0
-[33,] 9 0 0 11 0 0 0 3 0 3 0 1
-[34,] 3 0 0 0 0 1 0 0 0 1 0 4
-[35,] 8 0 0 0 0 0 0 5 12 0 5 13
-[36,] 0 0 0 0 1 3 5 1 0 0 0 0
-[37,] 0 0 20 53 1 0 11 0 0 0 2 1
-[38,] 0 14 0 0 4 0 0 0 6 0 2 9
-[39,] 0 0 0 4 0 0 2 0 0 0 1 0
-[40,] 1 2 0 2 0 0 4 0 0 0 0 0
-[41,] 2 1 1 1 0 0 0 0 0 1 6 5
-[42,] 0 0 0 61 0 0 1 37 0 1 0 0
-[43,] 12 3 0 0 8 0 0 0 0 0 0 2
-[44,] 0 28 0 29 0 0 7 0 4 0 0 6
+ [1,] 0 1 0 3 0 0 0 0 0 73 0 0
+ [2,] 0 7 0 0 0 1 1 1 1 0 0 0
+ [3,] 0 0 0 0 0 0 0 0 1 0 2 0
+ [4,] 0 0 0 30 0 0 1 1 0 0 1 0
+ [5,] 2 3 4 0 0 1 1 0 0 0 8 0
+ [6,] 3 0 0 0 0 0 55 0 0 1 0 0
+ [7,] 3 0 0 20 0 0 0 8 7 0 0 56
+ [8,] 0 0 0 0 3 17 0 0 0 0 0 0
+ [9,] 0 0 7 17 1 0 1 2 2 0 3 0
+[10,] 16 0 3 0 3 0 2 7 0 0 0 0
+[11,] 2 0 0 8 0 1 0 0 2 2 0 0
+[12,] 0 1 0 0 26 0 0 0 0 0 0 0
+[13,] 0 1 20 6 0 2 0 0 34 1 0 2
+[14,] 0 0 8 0 16 2 0 0 0 5 3 14
+[15,] 0 0 0 1 0 17 0 0 0 0 0 3
+[16,] 0 2 0 0 0 0 2 0 0 3 6 0
+[17,] 0 0 0 0 24 0 0 0 1 12 7 2
+[18,] 3 28 2 0 6 0 0 0 7 0 0 0
+[19,] 0 0 9 1 0 0 57 1 3 0 0 0
+[20,] 0 0 0 0 6 5 0 2 0 1 0 4
+[21,] 0 1 0 0 0 0 0 0 17 0 15 0
+[22,] 0 0 1 18 0 0 6 2 0 1 0 2
+[23,] 0 20 0 1 0 0 10 2 10 5 23 0
+[24,] 0 0 0 9 0 0 0 39 0 0 1 1
+[25,] 0 3 2 14 0 0 21 1 0 0 2 0
+[26,] 0 0 12 5 0 0 5 1 0 4 5 0
+[27,] 0 0 1 5 0 8 0 0 0 0 0 0
+[28,] 0 0 5 0 40 16 1 0 0 0 0 0
+[29,] 0 0 0 0 0 0 0 0 0 2 18 0
+[30,] 0 0 0 0 0 4 0 0 0 0 3 0
+[31,] 2 20 0 0 4 0 12 0 0 0 0 0
+[32,] 5 0 0 11 0 0 3 8 1 0 0 0
+[33,] 0 0 0 0 0 0 0 0 0 0 0 2
+[34,] 0 0 1 0 3 1 0 0 0 0 0 37
+[35,] 1 9 0 0 0 4 0 0 0 0 0 3
+[36,] 0 0 4 5 0 0 18 0 2 0 2 2
+[37,] 5 0 1 0 5 2 0 1 2 3 0 0
+[38,] 2 2 1 0 54 1 1 1 0 0 0 2
+[39,] 0 0 20 2 0 5 26 0 3 15 8 0
+[40,] 0 1 0 0 0 0 0 2 0 0 0 0
+[41,] 0 22 44 0 4 1 9 5 2 0 1 6
+[42,] 0 0 0 0 0 2 3 0 0 7 0 1
+[43,] 5 6 0 0 1 0 0 0 5 0 0 0
+[44,] 12 0 0 0 0 0 1 8 1 0 7 2
--> margin none shuffle both <--
grand sum: [1] TRUE
-row sums: [1] "Mean relative difference: 0.4682944"
-col sums: [1] "Mean relative difference: 1.192474"
+row sums: [1] "Mean relative difference: 0.4619368"
+col sums: [1] "Mean relative difference: 1.228379"
fill: [1] TRUE
-row freqs: [1] "Mean relative difference: 0.3378378"
-col freqs: [1] "Mean relative difference: 0.6527051"
+row freqs: [1] "Mean relative difference: 0.3531599"
+col freqs: [1] "Mean relative difference: 0.6381579"
[,1] [,2] [,3] [,4] [,5] [,6] [,7] [,8] [,9] [,10] [,11] [,12]
- [1,] 0 0 14 0 0 0 0 0 0 0 0 8
- [2,] 0 15 12 0 0 5 0 9 0 0 6 5
- [3,] 0 13 8 0 0 7 0 0 0 0 11 0
- [4,] 17 12 0 0 0 10 0 0 21 0 13 10
- [5,] 0 11 0 10 0 10 10 0 0 0 0 0
- [6,] 14 0 10 0 0 12 10 12 0 0 8 0
- [7,] 0 7 0 16 0 7 11 0 0 0 11 10
- [8,] 0 0 0 0 0 0 8 0 11 0 0 0
- [9,] 0 9 0 0 0 12 0 0 0 0 11 8
-[10,] 0 13 10 11 0 14 10 0 9 0 7 0
-[11,] 11 0 10 14 11 0 11 0 12 6 0 0
-[12,] 9 12 5 0 15 0 11 9 0 0 0 0
-[13,] 0 0 0 0 9 0 0 9 4 12 0 0
-[14,] 0 0 0 0 0 0 12 0 0 0 0 0
-[15,] 0 6 0 0 0 7 0 10 0 11 13 10
-[16,] 11 12 16 0 0 10 5 6 11 0 11 0
-[17,] 8 12 0 0 0 0 0 13 7 11 0 0
-[18,] 0 0 9 0 10 0 7 7 10 0 2 0
-[19,] 10 0 0 0 0 0 0 9 0 0 0 0
-[20,] 0 0 12 17 0 9 10 4 0 0 14 0
-[21,] 0 0 0 0 9 11 0 13 0 10 10 0
-[22,] 11 10 7 0 0 5 0 0 0 8 9 0
-[23,] 9 0 11 0 0 10 0 0 6 0 9 0
-[24,] 0 0 12 0 13 0 0 0 0 6 0 0
-[25,] 0 0 8 5 0 0 0 9 0 0 0 0
-[26,] 0 7 0 8 0 0 7 0 0 0 0 0
-[27,] 0 0 0 0 0 13 0 9 0 0 8 10
-[28,] 0 7 0 10 0 0 0 0 7 0 0 8
-[29,] 0 17 0 0 0 0 11 9 0 9 12 0
-[30,] 6 0 8 0 0 0 0 0 0 0 0 0
-[31,] 0 11 0 11 6 0 0 0 13 0 9 8
-[32,] 5 7 0 0 7 0 0 9 0 13 0 0
-[33,] 0 6 0 0 0 0 0 12 8 0 8 0
-[34,] 12 0 13 0 8 0 12 9 0 0 0 0
-[35,] 0 7 0 0 9 0 0 0 0 8 0 0
-[36,] 0 11 7 0 11 0 11 0 0 0 0 11
-[37,] 0 0 0 7 9 0 8 7 0 0 13 0
-[38,] 6 0 0 13 0 8 12 9 0 7 0 7
-[39,] 6 14 0 0 0 0 0 9 0 7 0 0
-[40,] 0 10 6 7 0 6 12 0 4 0 12 8
-[41,] 0 0 8 9 15 0 0 0 0 0 0 0
-[42,] 0 0 0 0 9 0 9 0 8 0 0 0
-[43,] 0 0 0 6 0 0 0 9 0 7 7 0
-[44,] 6 10 0 7 11 0 0 0 0 7 12 0
+ [1,] 0 0 0 14 0 0 9 16 7 5 0 0
+ [2,] 0 11 0 0 0 6 0 0 10 0 0 0
+ [3,] 5 0 0 13 0 0 0 0 0 12 0 0
+ [4,] 0 0 0 12 0 0 6 11 19 0 0 0
+ [5,] 0 0 0 6 0 6 0 0 7 0 13 9
+ [6,] 0 0 11 0 16 0 9 0 0 0 0 0
+ [7,] 0 12 5 0 0 0 0 0 13 0 0 0
+ [8,] 0 0 0 7 8 0 6 0 5 9 0 12
+ [9,] 6 14 0 11 0 10 12 0 12 0 8 0
+[10,] 7 0 0 0 0 12 8 0 0 0 8 0
+[11,] 9 0 0 0 0 10 0 0 0 0 0 11
+[12,] 0 0 8 5 12 8 0 0 0 0 0 0
+[13,] 0 0 0 0 0 7 0 0 0 11 10 0
+[14,] 0 0 0 0 6 13 0 0 5 0 0 0
+[15,] 7 9 0 0 0 0 15 6 0 11 8 0
+[16,] 0 0 0 0 0 0 0 9 0 11 0 0
+[17,] 11 0 0 6 6 11 0 8 0 0 0 11
+[18,] 0 0 0 10 0 0 0 7 0 0 0 14
+[19,] 0 14 0 7 0 0 12 10 10 0 6 0
+[20,] 8 13 0 4 0 11 8 0 0 0 0 0
+[21,] 11 7 8 11 0 12 11 16 0 0 0 0
+[22,] 0 8 0 0 0 8 0 14 0 9 0 0
+[23,] 0 0 0 2 14 9 0 0 12 14 0 0
+[24,] 0 0 0 0 0 0 0 0 0 0 6 0
+[25,] 0 9 0 11 0 0 11 0 7 0 0 0
+[26,] 0 11 0 0 4 0 12 10 0 8 0 0
+[27,] 0 9 0 0 16 0 0 0 0 0 0 0
+[28,] 0 0 9 10 0 8 8 0 8 15 0 8
+[29,] 0 0 0 10 11 3 11 10 0 10 0 0
+[30,] 12 7 0 0 0 8 8 0 7 0 6 9
+[31,] 8 6 8 9 0 0 0 6 6 0 11 0
+[32,] 0 0 0 14 10 8 0 0 10 0 0 0
+[33,] 11 0 0 0 0 0 0 0 0 0 0 0
+[34,] 0 7 11 0 0 0 10 10 8 0 0 5
+[35,] 9 0 0 8 0 11 14 0 0 0 0 10
+[36,] 13 0 0 0 0 10 7 9 8 0 9 6
+[37,] 6 0 0 0 0 11 9 0 10 0 0 6
+[38,] 9 0 0 7 0 0 0 0 8 19 5 0
+[39,] 0 0 0 0 0 0 0 6 0 16 0 10
+[40,] 0 0 0 0 13 0 0 10 0 0 11 12
+[41,] 0 0 0 0 0 6 13 13 10 0 0 8
+[42,] 0 0 0 0 0 9 7 0 0 0 8 0
+[43,] 0 0 0 0 0 0 0 0 0 0 13 8
+[44,] 0 0 9 0 0 7 14 9 6 9 0 0
--> margin rows shuffle ind <--
grand sum: [1] TRUE
row sums: [1] TRUE
-col sums: [1] "Mean relative difference: 1.161747"
-fill: [1] "Mean relative difference: 0.5733333"
-row freqs: [1] "Mean relative difference: 0.5733333"
-col freqs: [1] "Mean relative difference: 0.6078869"
+col sums: [1] "Mean relative difference: 1.181426"
+fill: [1] "Mean relative difference: 0.5700141"
+row freqs: [1] "Mean relative difference: 0.5700141"
+col freqs: [1] "Mean relative difference: 0.5909753"
[,1] [,2] [,3] [,4] [,5] [,6] [,7] [,8] [,9] [,10] [,11] [,12]
- [1,] 0 6 3 5 5 4 9 2 2 2 4 1
- [2,] 10 4 3 5 2 5 3 4 2 3 3 4
- [3,] 3 8 10 8 8 7 2 7 2 9 6 7
- [4,] 11 7 6 10 10 10 10 10 11 9 11 5
- [5,] 4 2 4 3 3 3 2 3 3 0 6 2
- [6,] 3 1 1 4 6 3 2 5 3 2 3 0
- [7,] 5 2 1 6 3 2 6 2 5 5 5 1
- [8,] 5 4 5 6 3 2 1 2 5 3 3 2
- [9,] 4 0 10 3 3 2 1 3 4 2 3 2
-[10,] 3 1 6 4 8 4 7 4 6 0 2 2
-[11,] 4 10 3 6 7 8 12 13 5 10 4 2
-[12,] 3 6 1 3 3 5 3 4 2 2 4 5
-[13,] 1 4 3 6 4 5 3 4 0 2 4 4
-[14,] 6 2 3 1 3 4 7 2 3 6 3 6
-[15,] 4 4 2 4 5 3 4 7 4 6 10 12
-[16,] 4 3 2 4 2 2 3 3 2 4 7 4
-[17,] 9 2 3 4 6 7 6 2 5 3 6 3
-[18,] 4 5 3 5 3 2 6 2 1 5 3 1
-[19,] 3 6 2 5 7 1 4 5 7 0 3 6
-[20,] 6 3 5 6 2 7 7 1 4 8 4 3
-[21,] 3 1 2 2 2 0 0 1 2 1 1 3
-[22,] 9 4 2 4 3 6 4 6 1 4 6 5
-[23,] 8 12 2 1 3 3 4 4 5 3 9 4
-[24,] 4 3 3 4 4 1 3 0 3 2 1 6
-[25,] 4 3 4 5 2 4 1 5 1 3 4 6
-[26,] 5 0 0 2 2 2 3 5 3 5 5 4
-[27,] 0 4 9 4 2 4 4 3 2 1 3 6
-[28,] 2 2 2 4 2 4 2 2 3 2 3 2
-[29,] 2 4 3 3 2 2 5 3 1 3 3 3
-[30,] 6 5 5 7 3 5 6 5 4 7 3 4
-[31,] 0 2 1 0 1 2 4 2 2 0 3 0
-[32,] 3 3 1 3 1 2 2 0 1 0 1 2
-[33,] 1 2 5 5 2 3 3 3 2 3 2 3
-[34,] 0 0 0 0 1 0 0 1 0 0 0 1
-[35,] 5 3 2 6 3 3 1 2 4 4 4 3
-[36,] 2 2 3 3 0 1 1 5 0 1 6 4
-[37,] 4 3 9 1 8 6 0 1 5 3 5 3
-[38,] 1 1 2 1 0 2 1 0 2 0 4 2
-[39,] 1 0 0 0 1 0 1 0 0 0 1 3
-[40,] 1 4 0 3 1 3 6 0 2 1 1 0
-[41,] 6 0 6 1 1 0 2 4 2 3 2 4
-[42,] 6 7 3 5 1 3 0 3 2 5 3 2
-[43,] 25 23 28 21 19 21 24 22 22 20 20 18
-[44,] 4 5 6 1 6 3 5 4 5 3 2 1
+ [1,] 4 4 7 3 3 3 2 3 3 4 4 4
+ [2,] 3 1 3 6 6 1 5 4 1 4 3 1
+ [3,] 5 6 5 10 5 5 9 12 6 4 7 9
+ [4,] 7 7 6 10 5 2 7 8 9 6 10 9
+ [5,] 4 1 2 3 1 0 3 1 1 4 2 2
+ [6,] 3 3 6 3 6 4 2 5 7 2 3 3
+ [7,] 6 3 2 5 5 5 3 3 6 3 2 4
+ [8,] 2 5 2 3 1 3 1 3 3 1 5 3
+ [9,] 0 2 1 1 1 4 4 3 1 1 3 3
+[10,] 7 7 4 5 4 2 5 3 1 3 5 7
+[11,] 5 11 3 8 6 6 2 9 2 4 7 5
+[12,] 3 2 2 6 2 4 8 4 4 3 2 6
+[13,] 8 4 4 4 3 2 6 3 3 1 4 5
+[14,] 5 3 6 6 4 4 1 4 5 3 4 5
+[15,] 4 6 6 4 4 8 7 6 1 5 6 6
+[16,] 1 4 1 2 2 6 2 1 3 2 3 4
+[17,] 4 7 2 2 7 4 5 4 9 4 4 5
+[18,] 0 3 3 1 0 2 2 2 3 5 0 2
+[19,] 3 0 6 1 7 3 4 8 5 4 3 4
+[20,] 5 8 3 5 4 6 7 3 7 8 4 2
+[21,] 0 3 2 1 0 0 1 2 1 0 2 4
+[22,] 1 4 5 4 5 3 3 4 5 4 3 8
+[23,] 7 3 4 4 6 7 1 3 1 4 5 5
+[24,] 6 1 1 5 3 2 6 3 4 5 2 4
+[25,] 4 1 2 4 1 1 3 6 6 9 4 4
+[26,] 2 2 4 3 3 5 5 3 1 4 3 6
+[27,] 3 6 4 6 10 9 4 5 2 5 6 4
+[28,] 4 1 1 3 3 2 2 3 2 3 0 4
+[29,] 4 5 3 3 5 3 1 5 6 3 3 1
+[30,] 4 4 7 6 3 2 4 2 6 5 5 0
+[31,] 3 1 3 1 2 2 0 2 0 1 1 1
+[32,] 2 1 1 3 0 0 0 2 2 2 2 1
+[33,] 4 4 9 3 2 3 4 3 3 3 2 2
+[34,] 0 0 0 0 0 0 1 0 0 1 0 1
+[35,] 6 3 3 2 1 3 4 5 5 0 6 3
+[36,] 4 2 6 3 2 0 2 4 5 1 3 1
+[37,] 7 3 1 1 2 5 3 4 5 5 2 2
+[38,] 2 0 1 1 1 0 2 2 2 2 1 1
+[39,] 0 0 0 0 1 0 0 1 0 0 1 0
+[40,] 2 1 2 3 3 2 3 0 3 4 0 2
+[41,] 0 1 8 1 1 1 3 4 3 2 2 3
+[42,] 5 5 5 4 3 4 1 1 3 7 1 6
+[43,] 15 23 23 30 24 28 16 21 19 26 22 25
+[44,] 3 2 2 3 3 2 4 3 4 4 2 2
--> margin rows shuffle samp <--
grand sum: [1] TRUE
row sums: [1] TRUE
-col sums: [1] "Mean relative difference: 1.316775"
+col sums: [1] "Mean relative difference: 1.173485"
fill: [1] TRUE
row freqs: [1] TRUE
-col freqs: [1] "Mean relative difference: 0.6372881"
+col freqs: [1] "Mean relative difference: 0.6414474"
[,1] [,2] [,3] [,4] [,5] [,6] [,7] [,8] [,9] [,10] [,11] [,12]
- [1,] 4 10 1 12 0 8 0 0 0 2 1 4
- [2,] 0 0 3 2 0 0 1 9 0 0 0 0
- [3,] 1 2 0 0 1 0 3 0 6 4 42 1
- [4,] 2 0 19 17 0 24 8 2 5 0 12 7
- [5,] 0 0 1 1 0 0 1 29 0 0 0 0
- [6,] 0 0 3 12 16 8 5 0 0 0 0 0
- [7,] 0 0 1 0 1 2 1 0 2 0 1 0
- [8,] 2 1 12 0 0 0 0 1 1 2 20 1
- [9,] 0 9 0 18 2 0 0 0 4 0 4 0
-[10,] 2 0 0 0 2 0 1 0 0 0 0 0
-[11,] 0 2 0 0 5 1 9 2 0 4 56 1
-[12,] 1 0 0 4 0 0 0 3 1 0 1 0
-[13,] 0 1 20 1 2 3 0 4 3 12 0 0
-[14,] 1 2 0 3 0 2 0 0 2 0 0 0
-[15,] 0 0 8 110 0 1 1 0 0 0 0 0
-[16,] 0 0 0 0 1 12 0 0 0 3 0 40
-[17,] 2 26 10 3 1 0 0 0 6 0 0 1
-[18,] 0 1 0 0 0 1 1 0 0 0 2 0
-[19,] 0 0 0 0 0 31 0 1 0 0 0 7
-[20,] 1 3 0 14 0 5 0 1 0 0 4 0
-[21,] 0 0 0 0 0 0 0 0 1 0 28 0
-[22,] 0 1 0 4 0 0 11 0 1 0 3 0
-[23,] 0 0 0 4 0 0 28 4 0 0 0 0
-[24,] 8 0 1 0 1 0 0 1 0 0 0 0
-[25,] 0 1 0 29 6 0 10 0 0 3 1 0
-[26,] 4 0 7 25 7 2 0 14 0 0 10 7
-[27,] 0 0 0 0 1 0 0 14 0 0 0 0
-[28,] 0 0 3 0 0 0 0 1 1 0 4 3
-[29,] 0 31 0 0 3 0 0 0 3 0 0 0
-[30,] 17 0 0 0 1 9 2 44 0 0 0 0
-[31,] 0 0 0 0 0 21 0 1 1 0 1 0
-[32,] 0 0 0 0 0 0 0 0 18 5 0 0
-[33,] 0 0 0 3 1 0 0 2 16 0 1 0
-[34,] 0 0 0 0 0 0 2 0 0 0 0 0
-[35,] 0 0 0 0 0 0 2 1 0 0 0 0
-[36,] 0 0 1 0 0 0 0 0 2 0 0 1
-[37,] 0 7 0 0 55 1 0 28 0 0 1 0
-[38,] 6 3 0 9 0 0 2 0 0 1 0 0
-[39,] 0 0 1 0 2 0 0 0 0 0 0 0
-[40,] 0 0 2 13 2 0 0 5 0 0 0 2
-[41,] 0 0 4 0 0 0 4 0 0 0 1 0
-[42,] 0 0 0 0 18 0 0 4 1 9 0 0
-[43,] 0 0 0 0 0 0 0 0 3 0 0 0
-[44,] 7 17 0 0 0 32 0 0 1 3 0 1
+ [1,] 0 1 0 2 1 3 1 1 0 8 4 0
+ [2,] 1 3 0 0 1 0 2 19 20 0 9 0
+ [3,] 0 7 42 2 36 1 1 1 3 0 35 17
+ [4,] 8 12 0 24 3 0 2 20 0 41 1 5
+ [5,] 7 0 0 0 0 1 8 0 0 0 1 0
+ [6,] 14 0 1 0 0 2 0 2 10 0 0 0
+ [7,] 32 0 0 0 0 0 0 2 2 0 0 2
+ [8,] 0 18 0 0 20 1 0 7 1 0 2 0
+ [9,] 0 0 5 0 9 2 4 0 2 5 0 0
+[10,] 2 0 0 23 0 0 1 0 1 38 1 1
+[11,] 0 2 22 39 2 1 1 0 1 0 9 0
+[12,] 0 0 1 0 4 2 1 0 2 0 3 21
+[13,] 2 12 0 0 0 3 0 1 0 0 3 0
+[14,] 0 0 0 0 1 3 0 22 2 0 0 2
+[15,] 0 0 0 0 15 4 1 0 0 1 8 0
+[16,] 0 0 0 0 0 0 40 3 0 0 0 0
+[17,] 26 65 0 0 0 0 1 5 0 0 0 0
+[18,] 0 5 0 0 0 2 0 0 0 0 0 1
+[19,] 0 1 0 0 0 0 0 7 6 0 0 0
+[20,] 0 0 1 3 7 0 0 0 16 14 0 0
+[21,] 0 0 28 0 0 0 0 0 0 0 0 0
+[22,] 11 0 1 1 1 0 0 4 1 52 6 6
+[23,] 0 0 0 12 4 1 0 28 42 0 5 4
+[24,] 0 1 0 1 24 0 20 0 0 0 0 0
+[25,] 10 0 0 3 0 53 0 29 0 0 0 4
+[26,] 7 0 7 0 17 0 0 0 0 1 0 0
+[27,] 8 0 14 3 2 0 0 0 0 0 0 0
+[28,] 3 0 0 3 0 0 0 0 0 0 0 1
+[29,] 46 0 0 0 0 3 0 0 0 0 1 0
+[30,] 3 0 0 0 0 10 17 0 0 25 0 2
+[31,] 0 0 0 0 0 0 1 0 0 0 0 0
+[32,] 0 0 0 0 0 0 5 0 0 0 0 0
+[33,] 0 54 3 0 0 17 0 0 0 0 0 0
+[34,] 0 0 0 0 0 0 0 0 0 0 1 2
+[35,] 1 1 0 2 0 0 1 0 12 0 57 0
+[36,] 0 0 0 0 0 0 0 2 0 0 0 29
+[37,] 0 1 0 0 4 0 28 1 1 16 55 0
+[38,] 0 0 5 3 9 0 0 0 0 0 0 0
+[39,] 0 0 0 0 3 2 0 0 1 0 1 0
+[40,] 0 2 2 2 0 0 19 8 0 0 0 1
+[41,] 0 0 1 0 0 0 0 4 0 3 0 0
+[42,] 0 0 0 0 0 0 1 0 3 0 9 21
+[43,] 0 4 0 11 0 7 0 0 0 723 0 0
+[44,] 0 0 0 3 1 0 0 22 0 3 0 0
--> margin rows shuffle both <--
grand sum: [1] TRUE
row sums: [1] TRUE
-col sums: [1] "Mean relative difference: 1.170378"
+col sums: [1] "Mean relative difference: 1.223546"
fill: [1] TRUE
row freqs: [1] TRUE
-col freqs: [1] "Mean relative difference: 0.6888889"
+col freqs: [1] "Mean relative difference: 0.6239168"
[,1] [,2] [,3] [,4] [,5] [,6] [,7] [,8] [,9] [,10] [,11] [,12]
- [1,] 2 6 9 0 5 0 0 10 11 4 0 4
- [2,] 0 0 0 8 3 0 0 7 0 5 12 5
- [3,] 0 12 4 9 9 9 0 11 5 9 0 0
- [4,] 7 14 9 0 11 11 0 11 11 0 10 16
- [5,] 5 6 0 7 0 6 0 5 6 0 0 6
- [6,] 8 5 0 6 3 0 8 0 4 6 0 6
- [7,] 0 5 0 4 10 0 0 5 8 0 7 8
- [8,] 0 4 3 0 0 5 0 8 5 3 4 3
- [9,] 0 3 5 0 5 0 0 0 0 11 4 0
-[10,] 13 0 5 0 0 0 0 8 0 0 0 0
-[11,] 0 0 0 11 12 0 0 12 0 6 0 9
-[12,] 4 0 5 7 0 0 0 0 3 8 4 0
-[13,] 9 6 0 10 2 12 6 0 0 14 5 0
-[14,] 9 0 9 5 0 8 3 0 10 15 0 0
-[15,] 13 23 0 0 17 0 0 0 20 0 0 0
-[16,] 0 7 0 0 0 0 11 0 0 0 9 9
-[17,] 0 0 10 0 0 10 14 0 19 11 16 0
-[18,] 0 12 0 11 0 5 7 0 0 0 10 0
-[19,] 17 0 0 0 12 0 0 0 0 0 0 0
-[20,] 11 10 0 0 12 15 19 0 0 0 8 0
-[21,] 0 0 0 17 0 0 0 0 0 0 0 0
-[22,] 8 10 10 6 15 0 17 8 13 0 6 0
-[23,] 0 7 0 0 8 0 10 4 15 12 0 9
-[24,] 0 0 0 0 10 11 6 8 0 0 11 12
-[25,] 0 6 0 0 0 12 0 8 0 14 0 0
-[26,] 6 0 10 0 0 0 0 0 0 5 0 0
-[27,] 0 16 0 0 16 0 16 0 0 0 0 0
-[28,] 0 0 0 8 9 9 0 4 0 0 0 7
-[29,] 0 0 0 7 0 0 9 0 0 0 0 0
-[30,] 0 0 10 0 0 15 0 0 6 0 0 10
-[31,] 10 0 0 4 0 0 0 0 0 0 5 0
-[32,] 0 0 0 0 0 7 10 0 0 10 0 0
-[33,] 12 0 0 0 9 0 0 11 0 12 0 9
-[34,] 0 0 0 0 0 0 0 1 0 0 0 0
-[35,] 0 5 0 0 0 21 6 0 14 0 0 0
-[36,] 0 0 0 12 0 0 10 0 0 0 0 0
-[37,] 8 6 0 9 11 0 12 14 0 9 0 0
-[38,] 0 0 0 0 6 2 0 0 0 6 0 0
-[39,] 0 0 0 0 0 0 0 2 0 0 0 0
-[40,] 0 11 7 5 5 4 2 5 0 0 0 0
-[41,] 0 7 0 0 0 0 5 7 0 8 5 0
-[42,] 0 7 8 0 0 10 0 10 9 8 0 0
-[43,] 0 0 116 0 0 0 0 0 0 0 0 0
-[44,] 0 7 0 0 0 0 0 8 0 0 9 0
+ [1,] 3 6 0 5 4 6 0 4 0 8 11 3
+ [2,] 7 0 7 0 5 0 0 0 10 0 0 7
+ [3,] 11 9 9 7 0 6 0 7 9 0 13 6
+ [4,] 0 11 17 11 12 11 0 8 12 0 19 11
+ [5,] 0 0 5 6 3 6 3 5 5 0 10 0
+ [6,] 6 0 4 0 6 0 0 5 0 0 3 0
+ [7,] 0 0 4 6 5 0 0 0 0 6 0 0
+ [8,] 3 6 2 6 4 4 3 0 0 7 4 2
+ [9,] 0 0 8 0 0 4 8 8 2 0 4 0
+[10,] 0 0 8 8 0 0 8 8 0 0 10 6
+[11,] 10 4 12 0 0 0 0 7 7 0 8 0
+[12,] 0 5 7 4 0 0 0 9 8 3 8 0
+[13,] 5 0 0 0 6 9 8 0 9 8 0 5
+[14,] 10 16 8 0 0 11 0 11 8 0 0 5
+[15,] 0 0 12 0 0 0 13 0 11 15 0 0
+[16,] 8 10 0 5 8 0 4 12 6 0 0 0
+[17,] 9 0 0 8 0 0 0 20 0 14 11 0
+[18,] 3 9 9 0 0 0 0 7 8 0 0 0
+[19,] 0 0 0 0 13 18 0 0 0 18 0 12
+[20,] 16 14 0 0 0 0 11 0 0 0 12 15
+[21,] 0 0 0 0 0 0 10 0 0 0 0 0
+[22,] 7 0 0 0 0 16 10 0 0 0 7 0
+[23,] 0 14 0 0 9 6 0 0 0 0 0 0
+[24,] 8 15 0 0 0 9 0 10 0 0 10 0
+[25,] 0 0 0 0 0 0 12 0 0 0 9 8
+[26,] 0 8 0 8 0 0 0 0 0 0 7 0
+[27,] 0 0 0 0 0 0 0 0 0 0 0 9
+[28,] 0 0 0 7 0 0 0 0 0 7 9 0
+[29,] 11 7 7 0 0 6 0 6 0 0 12 12
+[30,] 0 8 8 0 13 14 11 10 0 0 0 0
+[31,] 5 0 0 0 0 0 0 2 7 0 6 0
+[32,] 0 0 7 0 4 7 0 0 3 0 0 0
+[33,] 9 0 13 9 0 0 12 0 11 0 0 0
[TRUNCATED]
To get the complete diff run:
svnlook diff /svnroot/vegan -r 1908
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