[Vegan-commits] r1825 - in pkg/vegan: . inst

[noreply at r-forge.r-project.org]

Author: psolymos
Date: 2011-09-10 00:31:00 +0200 (Sat, 10 Sep 2011)
New Revision: 1825

Modified:
   pkg/vegan/NAMESPACE
   pkg/vegan/inst/ChangeLog
Log:
marking clamtest in NAMESPACE and ChangeLog

Modified: pkg/vegan/NAMESPACE
===================================================================
--- pkg/vegan/NAMESPACE	2011-09-09 22:27:09 UTC (rev 1824)
+++ pkg/vegan/NAMESPACE	2011-09-09 22:31:00 UTC (rev 1825)
@@ -6,7 +6,7 @@
 export(CCorA, MOStest, RsquareAdj, SSarrhenius, SSgitay, SSgleason,
 SSlomolino, adipart, adonis, anosim, beals, betadisper, betadiver,
 bgdispersal, bioenv, bstick, cIndexKM, calibrate, capscale, cascadeKM,
-cca, commsimulator, contribdiv, decorana, decostand, designdist,
+cca, commsimulator, contribdiv, clamtest, decorana, decostand, designdist,
 coverscale, dispindmorisita, distconnected, diversity, downweight,
 drarefy, eigengrad, eigenvals, envfit, estaccumR, estimateR, eventstar,
 factorfit, fisherfit, fitspecaccum, goodness, hiersimu, humpfit,
@@ -211,6 +211,7 @@
 S3method(plot, cascadeKM)
 S3method(plot, cca)
 S3method(plot, contribdiv)
+S3method(plot, clamtest)
 S3method(plot, decorana)
 S3method(plot, envfit)
 S3method(plot, fisherfit)
@@ -302,6 +303,7 @@
 S3method(print, specaccum)
 S3method(print, summary.bioenv)
 S3method(print, summary.cca)
+S3method(print, summary.clamtest)
 S3method(print, summary.decorana)
 S3method(print, summary.humpfit)
 S3method(print, summary.isomap)
@@ -360,6 +362,7 @@
 S3method(summary, anosim)
 S3method(summary, bioenv)
 S3method(summary, cca)
+S3method(summary, clamtest)
 S3method(summary, decorana)
 S3method(summary, eigenvals)
 S3method(summary, humpfit)

Modified: pkg/vegan/inst/ChangeLog
===================================================================
--- pkg/vegan/inst/ChangeLog	2011-09-09 22:27:09 UTC (rev 1824)
+++ pkg/vegan/inst/ChangeLog	2011-09-09 22:31:00 UTC (rev 1825)
@@ -17,6 +17,16 @@
 	called repeatedly by the corresponding permatfull and permatswap
 	functions.
 
+	* New function: clamtest (with summary and plot methods).
+	The method uses a multinomial model based on estimated species
+	relative abundance in two habitats, it minimizes bias 
+	due to differences in sampling intensities between two 
+	habitat types as well as bias due to insufficient sampling within each
+	habitat. The method permits a robust statistical classification 
+	of habitat specialists and generalists, without excluding rare 
+	species a priori. Based on Chazdon et al. 2011 (Ecology, 92, 1332--1343).
+
+
 Version 2.0-0 (released September 8, 2011)
 
 	* opened the release candidate ov vegan_2.0-0 on September 3,