[Vegan-commits] r1974 - pkg/vegan/inst/doc

[noreply at r-forge.r-project.org]

Author: jarioksa
Date: 2011-10-31 17:58:22 +0100 (Mon, 31 Oct 2011)
New Revision: 1974

Modified:
   pkg/vegan/inst/doc/FAQ-vegan.texi
Log:
fix markup and some typos

Modified: pkg/vegan/inst/doc/FAQ-vegan.texi
===================================================================
--- pkg/vegan/inst/doc/FAQ-vegan.texi	2011-10-31 16:26:24 UTC (rev 1973)
+++ pkg/vegan/inst/doc/FAQ-vegan.texi	2011-10-31 16:58:22 UTC (rev 1974)
@@ -38,7 +38,7 @@
 @subtitle Version of $Date$ 
 @author Jari Oksanen
 
- at vskip 0pt plus 1filll
+ at vskip 0pt plus 1fill
 @insertcopying
 @end titlepage
 
@@ -66,7 +66,7 @@
 @chapter Introduction
 
 @menu
-* What is vegan?::              
+* What is vegan?::               
 * What is R?::                  
 * How to obtain vegan and R?::  
 * What R packages vegan depends on?::  
@@ -90,9 +90,9 @@
 communities, and tools for diversity analysis, and other potentially
 useful functions.  Vegan is not self-contained but it must be run under
 R statistical environment, and it also depends on many other R
-packages. Vegan is @url{http://www.gnu.org/philosophy/free-sw.html, free
+packages. Vegan is @uref{http://www.gnu.org/philosophy/free-sw.html, free
 software} and distributed under
- at url{http://www.gnu.org/licenses/gpl.html, ,GPL2 license}.
+ at uref{http://www.gnu.org/licenses/gpl.html, ,GPL2 license}.
 
 @node What is R?, How to obtain vegan and R?, What is vegan?, Introduction
 @section What is R?
@@ -102,11 +102,11 @@
 to certain system functions, and the ability to run programs stored in
 script files.
 
-R has a home page at @url{http://www.R-project.org/}.  It is
- at url{http://www.gnu.org/philosophy/free-sw.html, free software}
+R has a home page at @uref{http://www.R-project.org/}.  It is
+ at uref{http://www.gnu.org/philosophy/free-sw.html, free software}
 distributed under a @acronym{GNU}-style
- at url{http://www.gnu.org/copyleft/copyleft.html, copyleft}, and an
-official part of the @url{http://www.gnu.org/, @acronym{GNU}} project
+ at uref{http://www.gnu.org/copyleft/copyleft.html, copyleft}, and an
+official part of the @uref{http://www.gnu.org/, @acronym{GNU}} project
 (``@acronym{GNU} S'').
 
 @node How to obtain vegan and R?, What R packages vegan depends on?, What is R?, Introduction
@@ -220,7 +220,7 @@
 Vegan version numbers are of type x.y-z, where number y is odd for
 stable release versions at @url{http://cran.r-project.org,,CRAN} and
 even for unstable release versions at
- at url{http://r-forge.r-project.org/projects/vegan,,F-Forge}.
+ at url{http://r-forge.r-project.org/projects/vegan,,R-Forge}.
 
 @node How to build vegan from sources?, Are there binaries for devel versions?, Version numbering in vegan, Introduction
 @section How to build vegan from sources?
@@ -325,9 +325,9 @@
 data. Most common reasons for non-numeric data are that row names were
 read as a non-numeric variable instead of being used as row names (check
 argument @code{row.names} in reading the data), or that the column names
-were interpted as data (check argument @code{header = TRUE} in reading
+were interpreted as data (check argument @code{header = TRUE} in reading
 the data). Another common reason is that you had empty cells in your
-input data, and these were interprted as missing values.
+input data, and these were interpreted as missing values.
 
 @node Can you analyse binary or cover class data?, Why dissimilarities in vegan differ from other sources?, I have only numeric and positive data but vegan still complaints, Ordination
 @section Can you analyse binary or cover class data?
@@ -395,7 +395,7 @@
 typically are much more useful for the whole community.  Correspondence
 analysis uses another measure of variation (which is not variance), and
 again it typically explains a ``smaller proportion'' than principal
-componentsm but with a better result.  Detrended correspondence analysis
+components but with a better result.  Detrended correspondence analysis
 and nonmetric multidimensional scaling even do not try to ``explain''
 the variation, but use other criteria.  All methods are incommensurable,
 and it is impossible to compare methods using ``explanation of