[Vegan-commits] r1625 - pkg/vegan/man

[noreply at r-forge.r-project.org]

Author: jarioksa
Date: 2011-06-07 09:10:37 +0200 (Tue, 07 Jun 2011)
New Revision: 1625

Modified:
   pkg/vegan/man/anova.cca.Rd
Log:
our paper was published in Methods in Ecology & Evolution 2, 269-277 (2011)

Modified: pkg/vegan/man/anova.cca.Rd
===================================================================
--- pkg/vegan/man/anova.cca.Rd	2011-06-04 10:49:19 UTC (rev 1624)
+++ pkg/vegan/man/anova.cca.Rd	2011-06-07 07:10:37 UTC (rev 1625)
@@ -109,7 +109,8 @@
   significance tests for each constrained axis.  All previous
   constrained axes will be used as conditions (\dQuote{partialled
   out}) and a test for the first constrained eigenvalues is
-  performed. You can stop permutation tests after exceeding a given
+  performed (Legendre et al. 2011). 
+  You can stop permutation tests after exceeding a given
   significance level with argument \code{cutoff} to speed up
   calculations in large models. Setting \code{by = "terms"} will
   perform separate significance test for each term (constraining
@@ -149,9 +150,14 @@
   Tests \code{by = "terms"} and \code{by = "margin"} are consistent
   only when \code{model = "direct"}.  
 }
-\references{
-  Legendre, P. and Legendre, L. (1998). \emph{Numerical Ecology}. 2nd English
-  ed. Elsevier.
+\references
+{
+  Legendre, P. and Legendre, L. (1998). \emph{Numerical Ecology}. 2nd
+  English ed. Elsevier.
+
+  Legendre, P., Oksanen, J. and ter Braak, C.J.F. (2011). Testing the
+  significance of canonical axes in redundancy analysis. \emph{Methods
+  in Ecology and Evolution} 2, 269--277.
 }
 \author{Jari  Oksanen}
 \seealso{\code{\link{cca}}, \code{\link{rda}}, \code{\link{capscale}}