[Vegan-commits] r1499 - in pkg/vegan: R inst man

[noreply at r-forge.r-project.org]

Author: jarioksa
Date: 2011-02-20 11:59:29 +0100 (Sun, 20 Feb 2011)
New Revision: 1499

Modified:
   pkg/vegan/R/as.preston.R
   pkg/vegan/R/prestonfit.R
   pkg/vegan/inst/ChangeLog
   pkg/vegan/man/fisherfit.Rd
Log:
default to 'tiesplit = TRUE'

Modified: pkg/vegan/R/as.preston.R
===================================================================
--- pkg/vegan/R/as.preston.R	2011-02-20 10:51:10 UTC (rev 1498)
+++ pkg/vegan/R/as.preston.R	2011-02-20 10:59:29 UTC (rev 1499)
@@ -1,5 +1,5 @@
 `as.preston` <-
-    function (x, tiesplit = FALSE, ...) 
+    function (x, tiesplit = TRUE, ...) 
 {
     if (inherits(x, "preston")) 
         return(x)

Modified: pkg/vegan/R/prestonfit.R
===================================================================
--- pkg/vegan/R/prestonfit.R	2011-02-20 10:51:10 UTC (rev 1498)
+++ pkg/vegan/R/prestonfit.R	2011-02-20 10:59:29 UTC (rev 1499)
@@ -1,5 +1,5 @@
 `prestonfit` <-
-    function (x, tiesplit = FALSE, ...) 
+    function (x, tiesplit = TRUE, ...) 
 {
     x <- as.preston(x, tiesplit = tiesplit)
     oct <- as.numeric(names(x))

Modified: pkg/vegan/inst/ChangeLog
===================================================================
--- pkg/vegan/inst/ChangeLog	2011-02-20 10:51:10 UTC (rev 1498)
+++ pkg/vegan/inst/ChangeLog	2011-02-20 10:59:29 UTC (rev 1499)
@@ -15,6 +15,8 @@
 	* procrustes: checks and reports different number of rows instead
 	of failing in crossprod() with incompatible arguments.
 
+	* prestonfit, as.preston: default now 'tiesplit = TRUE'.
+
 	* FAQ updates: using 'select' in ordination text() and points(),
 	using 'xlim' to flip axes or zoom into ordination plot(), the
 	non-effects of 'strata' in adonis(). All these indeed are

Modified: pkg/vegan/man/fisherfit.Rd
===================================================================
--- pkg/vegan/man/fisherfit.Rd	2011-02-20 10:51:10 UTC (rev 1498)
+++ pkg/vegan/man/fisherfit.Rd	2011-02-20 10:59:29 UTC (rev 1499)
@@ -27,14 +27,14 @@
 \method{confint}{fisherfit}(object, parm, level = 0.95, ...)
 \method{profile}{fisherfit}(fitted, alpha = 0.01, maxsteps = 20, del = zmax/5, 
     ...)
-prestonfit(x, tiesplit = FALSE, ...)
+prestonfit(x, tiesplit = TRUE, ...)
 prestondistr(x, truncate = -1, ...)
 \method{plot}{prestonfit}(x, xlab = "Frequency", ylab = "Species", bar.col = "skyblue", 
     line.col = "red", lwd = 2, ...)
 \method{lines}{prestonfit}(x, line.col = "red", lwd = 2, ...)
 veiledspec(x, ...)
 as.fisher(x, ...)
-as.preston(x, tiesplit = FALSE, ...)
+as.preston(x, tiesplit = TRUE, ...)
 }
 
 \arguments{