[Vegan-commits] r1738 - pkg/vegan/man

[noreply at r-forge.r-project.org]

Author: jarioksa
Date: 2011-08-21 13:26:38 +0200 (Sun, 21 Aug 2011)
New Revision: 1738

Modified:
   pkg/vegan/man/metaMDS.Rd
Log:
expand metaMDS examples

Modified: pkg/vegan/man/metaMDS.Rd
===================================================================
--- pkg/vegan/man/metaMDS.Rd	2011-08-21 06:37:51 UTC (rev 1737)
+++ pkg/vegan/man/metaMDS.Rd	2011-08-21 11:26:38 UTC (rev 1738)
@@ -334,6 +334,12 @@
 sol
 plot(sol, type="t")
 ## Start from previous best solution
-sol2 <- metaMDS(dune, previous.best = sol)
+sol <- metaMDS(dune, previous.best = sol)
+## Local NMDS and stress 2 of monoMDS
+sol2 <- metaMDS(dune, model = "local", stress=2)
+sol2
+## Use Arrhenius exponent 'z' as a binary dissimilarity measure
+sol <- metaMDS(dune, distfun = betadiver, distance = "z")
+sol
 }
 \keyword{ multivariate }