[Vegan-commits] r1209 - pkg/vegan/man

[noreply at r-forge.r-project.org]

Author: jarioksa
Date: 2010-06-01 09:05:25 +0200 (Tue, 01 Jun 2010)
New Revision: 1209

Modified:
   pkg/vegan/man/radfit.Rd
   pkg/vegan/man/treedive.Rd
Log:
more speed up of examples

Modified: pkg/vegan/man/radfit.Rd
===================================================================
--- pkg/vegan/man/radfit.Rd	2010-06-01 06:25:01 UTC (rev 1208)
+++ pkg/vegan/man/radfit.Rd	2010-06-01 07:05:25 UTC (rev 1209)
@@ -224,7 +224,7 @@
   \code{\link[lattice]{xyplot}}, \code{\link[lattice]{lset}}. }
 \examples{
 data(BCI)
-mod <- rad.lognormal(BCI[1,])
+mod <- rad.lognormal(BCI[5,])
 mod
 plot(mod)
 mod <- radfit(BCI[1,])
@@ -236,7 +236,7 @@
 ## Lattice graphics separately for each model
 radlattice(mod)
 # Take a subset of BCI to save time and nerves
-mod <- radfit(BCI[2:5,])
+mod <- radfit(BCI[3:5,])
 mod
 plot(mod, pch=".")
 }

Modified: pkg/vegan/man/treedive.Rd
===================================================================
--- pkg/vegan/man/treedive.Rd	2010-06-01 06:25:01 UTC (rev 1208)
+++ pkg/vegan/man/treedive.Rd	2010-06-01 07:05:25 UTC (rev 1209)
@@ -106,8 +106,6 @@
 ## Clustering of tree distances
 dtree <- treedist(dune, cl)
 plot(hclust(dtree, "aver"))
-## Use treedist() in metaMDS() instead of the standard vegdist():
-mod <- metaMDS(dune, distfun = treedist, tree = cl)
 }
 
 \keyword{ univar }