[Vegan-commits] r1405 - branches/1.17/inst branches/1.17/inst/doc pkg/vegan/inst pkg/vegan/inst/doc

[noreply at r-forge.r-project.org]

Author: jarioksa
Date: 2010-12-09 15:08:15 +0100 (Thu, 09 Dec 2010)
New Revision: 1405

Modified:
   branches/1.17/inst/ChangeLog
   branches/1.17/inst/doc/decision-vegan.Rnw
   pkg/vegan/inst/ChangeLog
   pkg/vegan/inst/doc/decision-vegan.Rnw
Log:
decision-vegan.Rnw learned sipoo.rda row names

Modified: branches/1.17/inst/ChangeLog
===================================================================
--- branches/1.17/inst/ChangeLog	2010-12-09 13:36:53 UTC (rev 1404)
+++ branches/1.17/inst/ChangeLog	2010-12-09 14:08:15 UTC (rev 1405)
@@ -77,6 +77,9 @@
 	* merged r1390: fix to plot.betadisper when plotting any axes other
 	than 1 and 2.
 
+	* sipoo.rda got row names and decision-vegan.Rnw changed
+	accordingly in parallel to pkg/vegan devel branch.
+
 Version 1.17-4 (released August 20, 2010)
 
 	* merged r1263: mrpp.Rd polish.

Modified: branches/1.17/inst/doc/decision-vegan.Rnw
===================================================================
--- branches/1.17/inst/doc/decision-vegan.Rnw	2010-12-09 13:36:53 UTC (rev 1404)
+++ branches/1.17/inst/doc/decision-vegan.Rnw	2010-12-09 14:08:15 UTC (rev 1405)
@@ -59,7 +59,7 @@
 mod <- nestedtemp(sipoo)
 plot(mod, "i")
 x <- mod$c["Falcsubb"]
-y <- 1 - mod$r["1"]
+y <- 1 - mod$r["Svartholm"]
 points(x,y, pch=16, cex=1.5)
 abline(x+y, -1, lty=2)
 f <- function(x, p) (1-(1-x)^p)^(1/p)
@@ -68,8 +68,8 @@
 arrows(x,y, r, f(r, mod$p), lwd=4)
 @
 \label{fig:nestedtemp}
-\caption{Matrix temperature for \emph{Falco subbuteo} on island 1
-  (dot; Sibbo Svartholmen). The curve is the fill line, and in a cold
+\caption{Matrix temperature for \emph{Falco subbuteo} on Sibbo
+  Svartholmen (dot). The curve is the fill line, and in a cold
   matrix, all presences (red squares) should be in the upper left
   corner behind the fill line. Dashed diagonal line of length $D$ goes
   through the point, and an arrow of length $d$ connects the point to

Modified: pkg/vegan/inst/ChangeLog
===================================================================
--- pkg/vegan/inst/ChangeLog	2010-12-09 13:36:53 UTC (rev 1404)
+++ pkg/vegan/inst/ChangeLog	2010-12-09 14:08:15 UTC (rev 1405)
@@ -4,6 +4,9 @@
 
 Version 1.18-18 (opened December 1, 2010)
 
+	* sipoo.rda: got island names, and decision-vegan.Rnw vignette was
+	changed accordingly.
+
 	* ordistep: Pierre Legendre's edits of the help page.
 
 	* prc: got back the formula interface and with that the na.action

Modified: pkg/vegan/inst/doc/decision-vegan.Rnw
===================================================================
--- pkg/vegan/inst/doc/decision-vegan.Rnw	2010-12-09 13:36:53 UTC (rev 1404)
+++ pkg/vegan/inst/doc/decision-vegan.Rnw	2010-12-09 14:08:15 UTC (rev 1405)
@@ -59,7 +59,7 @@
 mod <- nestedtemp(sipoo)
 plot(mod, "i")
 x <- mod$c["Falcsubb"]
-y <- 1 - mod$r["1"]
+y <- 1 - mod$r["Svartholm"]
 points(x,y, pch=16, cex=1.5)
 abline(x+y, -1, lty=2)
 f <- function(x, p) (1-(1-x)^p)^(1/p)
@@ -68,8 +68,8 @@
 arrows(x,y, r, f(r, mod$p), lwd=4)
 @
 \label{fig:nestedtemp}
-\caption{Matrix temperature for \emph{Falco subbuteo} on island 1
-  (dot; Sibbo Svartholmen). The curve is the fill line, and in a cold
+\caption{Matrix temperature for \emph{Falco subbuteo} on Sibbo
+  Svartholmen (dot). The curve is the fill line, and in a cold
   matrix, all presences (red squares) should be in the upper left
   corner behind the fill line. Dashed diagonal line of length $D$ goes
   through the point, and an arrow of length $d$ connects the point to