[Vegan-commits] r1403 - in pkg/permute: . inst

[noreply at r-forge.r-project.org]

Author: gsimpson
Date: 2010-12-09 11:12:04 +0100 (Thu, 09 Dec 2010)
New Revision: 1403

Added:
   pkg/permute/NAMESPACE
Modified:
   pkg/permute/DESCRIPTION
   pkg/permute/inst/ChangeLog
Log:
add a package NAMESPACE

Modified: pkg/permute/DESCRIPTION
===================================================================
--- pkg/permute/DESCRIPTION	2010-12-09 10:11:34 UTC (rev 1402)
+++ pkg/permute/DESCRIPTION	2010-12-09 10:12:04 UTC (rev 1403)
@@ -1,10 +1,10 @@
 Package: permute
 Title: Functions for generating restricted permutations of data
-Version: 0.0-2
+Version: 0.0-3
 Date: $Date$
 Author: Gavin L. Simpson
 Maintainer: Gavin L. Simpson <gavin.simpson at ucl.ac.uk>
-Suggests: vegan
+Depends: vegan
 Description: Restricted experimental designs are commonly encountered
              in ecological data. Ordination analyses of such data are
              generally tested using permutation tests. The 'permute' 

Added: pkg/permute/NAMESPACE
===================================================================
--- pkg/permute/NAMESPACE	                        (rev 0)
+++ pkg/permute/NAMESPACE	2010-12-09 10:12:04 UTC (rev 1403)
@@ -0,0 +1,18 @@
+## Visible functions:
+export(`allPerms`, `Blocks`, `getNumObs`, `numPerms`, `permCheck`,
+       `permControl`, `permute`, `permuted.index`, `Within`)
+
+## S3 Methods
+# print methods
+S3method(`print`, `allPerms`)
+S3method(`print`, `permCheck`)
+S3method(`print`, `permControl`)
+S3method(`print`, `summary.allPerms`)
+S3method(`print`, `summary.permCheck`)
+# summary methods
+S3method(`summary`, `allPerms`)
+S3method(`summary`, `permCheck`)
+# getNumObs methods
+S3method(`getNumObs`, `default`)
+S3method(`getNumObs`, `numeric`)
+S3method(`getNumObs`, `integer`)

Modified: pkg/permute/inst/ChangeLog
===================================================================
--- pkg/permute/inst/ChangeLog	2010-12-09 10:11:34 UTC (rev 1402)
+++ pkg/permute/inst/ChangeLog	2010-12-09 10:12:04 UTC (rev 1403)
@@ -2,8 +2,13 @@
 
 permute ChangeLog
 
-Version 0.0-2 (open February 28, 2010)
+Version 0.0-3 (opened December 09, 2010)
 
+	* NAMESPACE: permute gets a NAMESPACE. Needed to shield
+	functions form ones of similar name in vegan.
+
+Version 0.0-2 (closed December 09, 2010)
+
 	* allPerms: Large update. allPerms now works for all
 	permutation designs *except* when permuting both blocks
 	and within blocks. This exception is handled with