[Vegan-commits] r725 - pkg/vegan/inst

[noreply at r-forge.r-project.org]

Author: psolymos
Date: 2009-03-07 20:05:55 +0100 (Sat, 07 Mar 2009)
New Revision: 725

Modified:
   pkg/vegan/inst/ChangeLog
Log:
undo changes in ChangeLog due to function removals


Modified: pkg/vegan/inst/ChangeLog
===================================================================
--- pkg/vegan/inst/ChangeLog	2009-03-07 19:03:37 UTC (rev 724)
+++ pkg/vegan/inst/ChangeLog	2009-03-07 19:05:55 UTC (rev 725)
@@ -5,23 +5,14 @@
 Version 1.16-14 (opened Feb 24, 2009)
 
 	* as.ts.oecosimu: new function for applying time series methods
-	for sequential null models ("swap", "tswap", "abuswap").  The method was
-	implemented to study a lighter alternative to diagnose and
-	lagplot methods of "permat" objects.
+	for sequential null models ("swap", "tswap", "abuswap").
 
 	* metaMDSrotate: a new function to rotate metaMDS configuration so
 	that the first axis is parallel with a continuous site variable.
 	
-	* diagnose.permat: time series diagnostics for permat objects.
-	Performs a first order ARIMA model and Ljung-Box test for the
-	independence of the residuals. This function is useful to diagnose
-	independence for sequential algorithms.
+	* as.ts.permat: extracts summary statistics from 'permat' objects
+    as time series, to use for time series diagnostics.
 
-	* lagplot.permat: lagplot for permat simulations to graphically
-	diagnose independence when using sequential algorithms.  Reworked
-	examples on the help page shows time series related diagnostics
-	for permat objects.
-
 	* permatswap: two new methods (under "abuswap") added based on the
 	paper of Hardy 2008 (J Ecol 96, 914-926). These preserve row *and*
 	colunm occurrences, and row *or* column sums at the same