[Vegan-commits] r518 - pkg/man
noreply at r-forge.r-project.org
noreply at r-forge.r-project.org
Thu Oct 2 16:24:01 CEST 2008
Author: jarioksa
Date: 2008-10-02 16:24:01 +0200 (Thu, 02 Oct 2008)
New Revision: 518
Modified:
pkg/man/decorana.Rd
pkg/man/decostand.Rd
pkg/man/metaMDS.Rd
pkg/man/spantree.Rd
pkg/man/specpool.Rd
Log:
removed doubled 'the the' from help pages
Modified: pkg/man/decorana.Rd
===================================================================
--- pkg/man/decorana.Rd 2008-10-02 14:14:58 UTC (rev 517)
+++ pkg/man/decorana.Rd 2008-10-02 14:24:01 UTC (rev 518)
@@ -126,7 +126,7 @@
eigenvalues. The proper eigenvalues are estimated after extraction of
the axes and they are the ratio of biased weighted variances of site
and species scores even in detrended and rescaled solutions. The
- `decorana values' are provided only for the the compatibility with
+ `decorana values' are provided only for the compatibility with
legacy software, and they should not be used.
}
\value{
Modified: pkg/man/decostand.Rd
===================================================================
--- pkg/man/decostand.Rd 2008-10-02 14:14:58 UTC (rev 517)
+++ pkg/man/decostand.Rd 2008-10-02 14:24:01 UTC (rev 518)
@@ -44,7 +44,7 @@
\item \code{chi.square}: divide by row sums and square root of
column sums, and adjust for square root of matrix total
(Legendre & Gallagher 2001). When used with the Euclidean
- distance, the distances should be similar to the the
+ distance, the distances should be similar to the
Chi-square distance used in correspondence analysis. However, the
results from \code{\link{cmdscale}} would still differ, since
CA is a weighted ordination method (default \code{MARGIN =
Modified: pkg/man/metaMDS.Rd
===================================================================
--- pkg/man/metaMDS.Rd 2008-10-02 14:14:58 UTC (rev 517)
+++ pkg/man/metaMDS.Rd 2008-10-02 14:24:01 UTC (rev 518)
@@ -176,7 +176,7 @@
based on closer dissimilarities where the relation between ordination
distance and community dissimilarity is rather linear; the limit is
controlled by parameter \code{threshold}. If there are enough points
- below this threshold (controlled by the the parameter
+ below this threshold (controlled by the parameter
\code{nthreshold}), dissimilarities are regressed on distances.
The intercept of this regression is taken as the replicate
dissimilarity, and half-change is the distance where similarity
Modified: pkg/man/spantree.Rd
===================================================================
--- pkg/man/spantree.Rd 2008-10-02 14:14:58 UTC (rev 517)
+++ pkg/man/spantree.Rd 2008-10-02 14:24:01 UTC (rev 518)
@@ -60,7 +60,7 @@
the tree segments. Function \code{plot} displays the tree over a
supplied ordination configuration, and \code{lines} adds a spanning
tree to an ordination graph. If configuration is not supplied for \code{plot},
- the function ordinates the the cophenetic dissimilarities of the
+ the function ordinates the cophenetic dissimilarities of the
spanning tree and overlays the tree on this result. The default
ordination function is \code{\link[MASS]{sammon}} (package \pkg{MASS}),
because Sammon scaling emphasizes structure in the neighbourhood of
Modified: pkg/man/specpool.Rd
===================================================================
--- pkg/man/specpool.Rd 2008-10-02 14:14:58 UTC (rev 517)
+++ pkg/man/specpool.Rd 2008-10-02 14:24:01 UTC (rev 518)
@@ -90,7 +90,7 @@
the number
of individuals in rare species.
- Functions estimate the the standard errors of the estimates. These
+ Functions estimate the standard errors of the estimates. These
only concern the number of added species, and assume that there is
no variance in the observed richness.
The equations of standard errors are too complicated to be reproduced in
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