[Vegan-commits] r410 - in pkg: . inst man

[noreply at r-forge.r-project.org]

Author: psolymos
Date: 2008-06-09 16:41:20 +0200 (Mon, 09 Jun 2008)
New Revision: 410

Modified:
   pkg/DESCRIPTION
   pkg/inst/ChangeLog
   pkg/man/permat.Rd
Log:
version number updated


Modified: pkg/DESCRIPTION
===================================================================
--- pkg/DESCRIPTION	2008-06-09 13:54:00 UTC (rev 409)
+++ pkg/DESCRIPTION	2008-06-09 14:41:20 UTC (rev 410)
@@ -1,9 +1,9 @@
 Package: vegan
 Title: Community Ecology Package
-Version: 1.14-3
-Date: June 5, 2008
+Version: 1.14-4
+Date: June 9, 2008
 Author: Jari Oksanen, Roeland Kindt, Pierre Legendre, Bob O'Hara, Gavin L. Simpson, 
-  M. Henry H. Stevens, Helene Wagner  
+  M. Henry H. Stevens, Helene Wagner, Peter Solymos  
 Maintainer: Jari Oksanen <jari.oksanen at oulu.fi>
 Suggests: MASS, mgcv, lattice, cluster, scatterplot3d, rgl, ellipse,
   tcltk 

Modified: pkg/inst/ChangeLog
===================================================================
--- pkg/inst/ChangeLog	2008-06-09 13:54:00 UTC (rev 409)
+++ pkg/inst/ChangeLog	2008-06-09 14:41:20 UTC (rev 410)
@@ -1,8 +1,10 @@
 $Date$
 
 VEGAN DEVEL VERSIONS at http://r-forge.r-project.org/
+
+Version 1.14-4 (opened June p, 2008)
 
-Version 1.14-3 (opened June 5, 2008)
+Version 1.14-3 (closed June p, 2008)
 
         * permatfull, permatswap and swapcount: functions to generate 
         unrestricted and restricted null model community data matrices

Modified: pkg/man/permat.Rd
===================================================================
--- pkg/man/permat.Rd	2008-06-09 13:54:00 UTC (rev 409)
+++ pkg/man/permat.Rd	2008-06-09 14:41:20 UTC (rev 410)
@@ -35,7 +35,7 @@
 \details{
 Unrestricted and restricted permutations: if both \code{reg} and \code{hab} are \code{NULL}, functions perform unrestricted permutations. If either of the two is given, it is used as is for restricted permutations. If both are given, interaction is used for restricted permutations.
 
-Constraints on row/col, dill, sum
+Constraints on row/colum sums, matrix fill, total sum and sums within strata can be chacked by the \code{summary} method.
 }
 \value{
 Functions \code{permatfull} and \code{permatswap} return an object of class 'permat'.
@@ -44,7 +44,7 @@
   \item{perm}{a list of permuted matrices with length \code{times}.}
   \item{specs}{a list of other specifications (variable in length, depending on the function used): \code{reg}, \code{hab}, \code{burnin}, \code{thin}.}
 
-\code{summary.permat} returns a list invisibly containing mean Bray-Curtis dissimilarities calculated pairvise among original and permuted matrices, and 
+\code{summary.permat} returns a list invisibly containing mean Bray-Curtis dissimilarities calculated pairvise among original and permuted matrices, and check results of the constraints.
 }
 \note{
 Swap methods can be very slow for large matrices.