[Vegan-commits] r648 - in branches/1.15: . inst man

[noreply at r-forge.r-project.org]

Author: jarioksa
Date: 2008-12-19 11:26:29 +0100 (Fri, 19 Dec 2008)
New Revision: 648

Modified:
   branches/1.15/DESCRIPTION
   branches/1.15/inst/NEWS
   branches/1.15/man/permatfull.Rd
Log:
Last fixes for the CRAN release 1.15-1

Modified: branches/1.15/DESCRIPTION
===================================================================
--- branches/1.15/DESCRIPTION	2008-12-19 09:43:42 UTC (rev 647)
+++ branches/1.15/DESCRIPTION	2008-12-19 10:26:29 UTC (rev 648)
@@ -1,7 +1,7 @@
 Package: vegan
 Title: Community Ecology Package
 Version: 1.15-1
-Date: October 10, 2008
+Date: December 19, 2008
 Author: Jari Oksanen, Roeland Kindt, Pierre Legendre, Bob O'Hara, Gavin L. Simpson, 
    Peter Solymos, M. Henry H. Stevens, Helene Wagner  
 Maintainer: Jari Oksanen <jari.oksanen at oulu.fi>

Modified: branches/1.15/inst/NEWS
===================================================================
--- branches/1.15/inst/NEWS	2008-12-19 09:43:42 UTC (rev 647)
+++ branches/1.15/inst/NEWS	2008-12-19 10:26:29 UTC (rev 648)
@@ -14,7 +14,7 @@
       (NULL) row or column names, also in plots.
 
     - cca/rda/capscale: new functions 'head' and 'tail' for 'summary'
-      of cca results to show only some rows of the result.
+      of cca results to show only some rows of the scores.
 
     - nestedness: method nesteddisc was found to be strongly dependent
       on the ordering of tied column (species) frequencies. A warning

Modified: branches/1.15/man/permatfull.Rd
===================================================================
--- branches/1.15/man/permatfull.Rd	2008-12-19 09:43:42 UTC (rev 647)
+++ branches/1.15/man/permatfull.Rd	2008-12-19 10:26:29 UTC (rev 648)
@@ -68,7 +68,7 @@
 
 The 'swapcount' algorithm tries to find 2x2 submatrices (identified by 2 random row and 2 random column indices), that
 can be swapped in order to leave column and row totals and fill unchanged. First, the algorithm finds the largest value
-in the submatrix that can be swapped (\eqn{d]) and whether in diagonal or antidiagonal way. Submatrices that contain values larger than zero in either diagonal or antidiagonal position can be swapped. Swap means that the values in diagonal or antidiagonal positions are decreased by \eqn{d}, while remaining cells are increased by \eqn{d}. A swap is made only if fill doesn't change.
+in the submatrix that can be swapped (\eqn{d}) and whether in diagonal or antidiagonal way. Submatrices that contain values larger than zero in either diagonal or antidiagonal position can be swapped. Swap means that the values in diagonal or antidiagonal positions are decreased by \eqn{d}, while remaining cells are increased by \eqn{d}. A swap is made only if fill doesn't change.
 
 Constraints on row/colum sums, matrix fill, total sum and sums within
 strata can be checked by the \code{summary} method. \code{plot} method is for